Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02433 ATGGCAGGCCCTTCATTCTGCCTCTTCTTCATCACCATCATCCTCTTCTCTCTCCATATCCCATCTCTCACTTTCTCCTCACCAGTGGAGGACCCAGAATTGGTGGTACAAGAGGTACACAGAAAAATCAATGCTACTAGGAGGAACTTAGGATACCTGTCTTGCGGGACTGGCAACCCCATTGATGATTGCTGGAGGTGTGACCCCAATTGGCAGCAGAACAGGCAAAGGCTAGCTGATTGTGCAATTGGGTTTGGCAAGAATGCCATTGGTGGGAGGGATGGTAAGATTTACGTCGTCACAGATTCTGGCAATGATGACCCTGTGAACCCTAAACCAGGGACGCTACGATATGCTGTGATCCAAGATGAGCCACTGTGGATCATTTTTGCGAGAGACATGGTGATTCAGCTGAAGGAAGAATTGATTATGAACTCGTTCAAGACCTTGGATGGTAGAGGGGCTAGCGTGCACATTGCTGAGGGTCCATGCATCACCATACAGTACGTGAATAACATCATCATTCATGGGATTAACATTCATGACTGCAAGCAAGGAGGCAATGCTATGGTGAGGGACTCCCCACGACACTACGGGTGGAGAACTATATCGGATGGTGATGGAGTATCTCTCTTCGGTGCAAGTCATGTTTGGGTGGACCACTGCTCTTTATCTAATTGTGCGGATGGCTTGATTGATGCAATTCATGGGTCCACTGCTATTACCATTTCAAACAATTACATGACACACCATGACAAAGTCATGCTCTTGGGTCATAGCGATACCTATACTCAAGACAAGGCTATGCAGGTCACGATAGCTTTCAATCACTTTGGAGAAGGGCTCGTTCAGAGGATGCCCAGATGTAGGCATGGCTACTTCCATGTTGTGAACAATGACTATACCCACTGGGAGATGTATGCCATTGGAGGGAGTGCTGATCCAACCATCAATAGCCAAGGGAACAGGTTTCTTGCCCCAAACAACATGAACAGTAAAGAGGTGACTAAACATGAGGATGCGGCAGAAAGTGAATGGAAGAATTGGAATTGGAGGTCAGAAGGAGACTTGTTCATAAATGGTGCGTTTTTTACAGCATCAGGTGCAGGAGCTTCGTCTAGCTATGCAAAGGCTTCAAGCTTAAGTGCTAGACCCTCTTCACTTGTCGGTTCGATAACGACCGCTGCGGGTGCACTGAACTGTAGGAAAGGGTCCCGTTGCTGA 1224 0.4747 MAGPSFCLFFITIILFSLHIPSLTFSSPVEDPELVVQEVHRKINATRRNLGYLSCGTGNPIDDCWRCDPNWQQNRQRLADCAIGFGKNAIGGRDGKIYVVTDSGNDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTLDGRGASVHIAEGPCITIQYVNNIIIHGINIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSLFGASHVWVDHCSLSNCADGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKAMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRFLAPNNMNSKEVTKHEDAAESEWKNWNWRSEGDLFINGAFFTASGAGASSSYAKASSLSARPSSLVGSITTAAGALNCRKGSRC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02433 407 FunFam Pectate lyase 58 400 - -
Pte2g02433 407 SUPERFAMILY Pectin lyase-like 44 402 IPR011050 -
Pte2g02433 407 Pfam Pectate lyase 145 324 IPR002022 -
Pte2g02433 407 PANTHER PECTATE LYASE 18-RELATED 30 405 IPR045032 GO:0030570
Pte2g02433 407 SMART amb_all 133 330 IPR002022 -
Pte2g02433 407 Gene3D - 58 400 IPR012334 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 307 326 IPR018082 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 349 373 IPR018082 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 141 157 IPR018082 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 105 130 IPR018082 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 81 98 IPR018082 -
Pte2g02433 407 PRINTS Pollen allergen Amb family signature 205 226 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02433 Pte-Chr2 43745891 43747709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02433 5 408 Polysaccharide Lyase AT5G63180 81.373 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02433 K01728 - aew:130750005 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00185 3 1737126 1739135 Pte2g02433 2 43745891 43747709 RCT
Pte1g01992 1 41109169 41111069 Pte2g02433 2 43745891 43747709 RCT
Pte2g02433 2 43745891 43747709 Pte2g02433 2 43745891 43747709 RCT