Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02422 ATGGCTATCGCAGGTAATCCGGTCGTGAAGGCTTTGACGATGTCCGACTCATGTCTGTTATCTTTTCCATCACTTGGCAATTCGAAAACTATCTATTCATGTCACGCTGTTCCGTCAAAACCCATCAAACTCCATCTCTCTTGTTGCTCAAAAAACACTTCAATTTTTCTACCTACGTTGTCTCTGAGGAAGAAGACCCATTTTTCATCTATTACCACTTTTGTTGCCCATACCTCTGACTGGGCTGCAGAAGAATTGCAACAGTTAGAGCAAGACGAAGAAGCTGAGCAAGAAGAACCCATCACCGAAAACGGTAACTTGTCAGAGAGTGAACCTAGTTTTCCCGAGAGGGAAACCGAGGGTGAAGACTATTTGTTTGTAGGAGAAGGAGCCGAAGATGGGGGTTTTGAAGAGAGAGAAGATGGCGACTATTTAGAACCGGCTGGAGATGGTGACTTCGTTGAACCACCTGAAGATGCCAAGCTTTTCGTTGGGAATTTGCCTTATGATGTTGACTGTGATGCTCTAGCTGCTCTTTTTGACCAGGCTGGGACAGTAGAGATTGCAGAGGTCATATACAATAGGGAGACTGAACGGAGCCGTGGGTTTGGGTTTGTGACTATGAGTACAGTTGCTGAAGCTGAAAAGGCTGTGGAGAAATTCCATCAGTATGATATGGGTGGACGGTTTTTGACTGTCAACAAGGCTGCTCCACGGGGAGCAAGGGTAGAACGACCCCCTCGTGAAGTTGGACCTTCCTTCACGGTGTATGTTGGCAACTTGCCTTGGGACGTTGATGATGCTCGTTTACAGCAGATTTTTAGTGAACATGGGAAAGTAACAAGTGCCCGAGTTATTTATGACCGAGAAACCAACCGCTCACGCGGTTTTGCCTTTGTAACAATGGCTACTGAAAGTGAGATGAATGATGCCGTTGCTGCTCTTGATGGCCAGAGTTTGGATGGGAGAACAATCAGAGTTAGTGTTGCAGAGAACAGATCCAGGCGTTGA 1011 0.4639 MAIAGNPVVKALTMSDSCLLSFPSLGNSKTIYSCHAVPSKPIKLHLSCCSKNTSIFLPTLSLRKKTHFSSITTFVAHTSDWAAEELQQLEQDEEAEQEEPITENGNLSESEPSFPERETEGEDYLFVGEGAEDGGFEEREDGDYLEPAGDGDFVEPPEDAKLFVGNLPYDVDCDALAALFDQAGTVEIAEVIYNRETERSRGFGFVTMSTVAEAEKAVEKFHQYDMGGRFLTVNKAAPRGARVERPPREVGPSFTVYVGNLPWDVDDARLQQIFSEHGKVTSARVIYDRETNRSRGFAFVTMATESEMNDAVAALDGQSLDGRTIRVSVAENRSRR* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02422 336 Coils Coil 79 99 - -
Pte2g02422 336 Gene3D - 77 243 IPR012677 -
Pte2g02422 336 Gene3D - 244 336 IPR012677 -
Pte2g02422 336 PANTHER OS02G0815200 PROTEIN 39 333 - -
Pte2g02422 336 SMART rrm1_1 161 234 IPR000504 GO:0003723
Pte2g02422 336 SMART rrm1_1 255 328 IPR000504 GO:0003723
Pte2g02422 336 CDD RRM2_NsCP33_like 255 330 - -
Pte2g02422 336 FunFam 31 kDa ribonucleoprotein, chloroplastic 244 336 - -
Pte2g02422 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 256 326 IPR000504 GO:0003723
Pte2g02422 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 231 IPR000504 GO:0003723
Pte2g02422 336 SUPERFAMILY RNA-binding domain, RBD 156 248 IPR035979 GO:0003676
Pte2g02422 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 332 IPR000504 GO:0003723
Pte2g02422 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 238 IPR000504 GO:0003723
Pte2g02422 336 MobiDBLite consensus disorder prediction 90 120 - -
Pte2g02422 336 SUPERFAMILY RNA-binding domain, RBD 247 335 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02422 Pte-Chr2 43686641 43689239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02422 158 336 Eukaryotic Initiation Factors Gene Family AT3G16380 34.043 8.62e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02422 - - qsa:O6P43_030799 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00193 3 1772251 1774962 Pte2g02422 2 43686641 43689239 RCT
Pte2g02422 2 43686641 43689239 Pte2g02422 2 43686641 43689239 RCT