Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02348 ATGGATCCTCCCCTCGTCAATGAGTCCTCATTCTCTGCAGCTAACCCATCTGCTTACACATTAGCTGAGATTTGGCCTCTTAGTGGGGAAGCCGATGCTGGTGAATTGGGCCGCCGAATGGGCAAATCGGGTCACGAATTTACTGGGTTTGCTGACGTTGCGGCAAATCGAGATGGATCGCTAGAGGAATCCACTGTCACCGAGCAGAGTGCCGGTGGAGGCCGAGCCAGAAGCAATGTTGCCCGTTCTCTAAGCAAGAGGAAAGATGTGAGCTTGGAGGACGAGTCCTCGAAGATAGTCTCTACTAGTAGTACTGCCAATGACTTGAATGATTCAACCAGTAAACGGATAAAACTAGCAGGATCTAGAGAAAATGATGGTTTGAAGGCCGAACTGGAGACAAGTTCTGCAGCTCACAACAACTCAACTGAACAATTCACAAAGCCAGCTGAGCCATCCAAGCAAGACTACATACATGTGAGAGCGAGGAGGGGCCAAGCTACGGACAGTCACAGTCTAGCAGAAAGAGCAAGGAGAGAAAAAATCAGCGAAAGGATGAGAATACTTCAGGATTTGGTTCCCGGATGCAACAAGGTTATTGGTAAAGCACTTGTGCTTGACGAGATAATTAACTACATCCAATCTCTCCAACGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTCAATTCAAGAATGCACATAAGCCATGCTATTGAAGGCTTTCCTTCAAAAGATCTTGGGGCGCCAGCATTTGATGCTTCTGGGCTGATATTTGCATCACAAGCATCGAGGGGCTATGTTCAGGGGCCACAGCCCGAATGGCTACACATGCAATTAGGTGGTAGTTTTGAGAGGGCAACATAG 870 0.4782 MDPPLVNESSFSAANPSAYTLAEIWPLSGEADAGELGRRMGKSGHEFTGFADVAANRDGSLEESTVTEQSAGGGRARSNVARSLSKRKDVSLEDESSKIVSTSSTANDLNDSTSKRIKLAGSRENDGLKAELETSSAAHNNSTEQFTKPAEPSKQDYIHVRARRGQATDSHSLAERARREKISERMRILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMHISHAIEGFPSKDLGAPAFDASGLIFASQASRGYVQGPQPEWLHMQLGGSFERAT* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02348 289 FunFam Basic helix-loop-helix transcription factor 163 235 - -
Pte2g02348 289 CDD bHLH_AtBPE_like 156 234 - -
Pte2g02348 289 MobiDBLite consensus disorder prediction 56 128 - -
Pte2g02348 289 SMART finulus 172 222 IPR011598 GO:0046983
Pte2g02348 289 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 259 IPR024097 GO:0006355
Pte2g02348 289 Pfam Helix-loop-helix DNA-binding domain 170 217 IPR011598 GO:0046983
Pte2g02348 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 235 IPR036638 GO:0046983
Pte2g02348 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 216 IPR011598 GO:0046983
Pte2g02348 289 MobiDBLite consensus disorder prediction 60 76 - -
Pte2g02348 289 Gene3D - 163 240 IPR036638 GO:0046983
Pte2g02348 289 MobiDBLite consensus disorder prediction 96 116 - -
Pte2g02348 289 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02348 Pte-Chr2 43092938 43096837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02348 1 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 56.081 4.11e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte2g02348 HLH 6.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02348 - - zju:107418528 401.364