Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02332 ATGGCAGGTGGAGGGGTCTGTGGCGGTTGTCGTGGCAATGCTTCCAATTTGAACGTTTTACTTCGCAATCAAACTAGAACTCGTACTTCTGAGCCTCTCGATGCACTTTTCTTGTCTGGGCCATCTTCTTCTTTTCTCGGTTCAAGATCCATGGTAAGCTTTGAAGATGTTCAAGTGAAAAGGGGATGCACTGGTTCATTCTTCCACCCGTTTGACCAAGATGATAATCGAGATGACGATCTCGATGATTTCTTTCATCAACCTGAAAAAAAGAAACGCCTTACCACAGATCAAGTGCAGTTTCTTGAGAAAAGCTTTGAGCTGGAGAACAAGCTTGAGCCGGAAAGGAAAATTCAGCTGGCAAAAGATCTCGATTTACAGCCCCGACAAGTGGCAATTTGGTTTCAGAACCGCCGGGCAAGATGGAAGAACAAGCAACTGGAGAAGGACTATGACACCCTCCAAGCTAGTTACAATAGCCTTAAGGATGACTATGAGAGCCTTCTCAAGGAGAAAGATGCATTAAATGCCCAGGTTCTGGATCTGAAAGGAAAGTTGCTCAAAGGTGAGCAACAAGGGAATGGCCTTGAGCAGATTGATGACAAGAAATTACACGAACCAAAGCCGAAGCATTTAGTTGATACAGCTTCTGCAAATGAACTATCCAAAGTATCATCTGTGGCTTATAAACTGGAAGATATCAGTTCGGTCAAAAGTGACATAGTTGACTCATATAGTCCACATAAGACAGACGGAGTTCACTCCTCGTTCCTTGAGACTGGGGATGCATGTTATGTTTTTGAACCTGATCAATCAGATCTTTCTCAAGACGAAGAAGAGAACTCAAGTAAAGATCTGTTCCCATTGCCTCCTTATTTCTTCCCAAAGCTTGAAGACGCTAATTATTCCGACCTGTCTGCAAGTTCTTGTAATCTTGGCTTTCCGGTCCAAGATCACGCTATTTGGTCATGGTCTTACTGA 981 0.4353 MAGGGVCGGCRGNASNLNVLLRNQTRTRTSEPLDALFLSGPSSSFLGSRSMVSFEDVQVKRGCTGSFFHPFDQDDNRDDDLDDFFHQPEKKKRLTTDQVQFLEKSFELENKLEPERKIQLAKDLDLQPRQVAIWFQNRRARWKNKQLEKDYDTLQASYNSLKDDYESLLKEKDALNAQVLDLKGKLLKGEQQGNGLEQIDDKKLHEPKPKHLVDTASANELSKVSSVAYKLEDISSVKSDIVDSYSPHKTDGVHSSFLETGDACYVFEPDQSDLSQDEEENSSKDLFPLPPYFFPKLEDANYSDLSASSCNLGFPVQDHAIWSWSY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02332 326 FunFam homeobox-leucine zipper protein ATHB-6-like 93 139 - -
Pte2g02332 326 Pfam Homeodomain 90 144 IPR001356 GO:0003677
Pte2g02332 326 CDD homeodomain 90 146 IPR001356 GO:0003677
Pte2g02332 326 SMART HOX_1 87 149 IPR001356 GO:0003677
Pte2g02332 326 Pfam Homeobox associated leucine zipper 145 186 IPR003106 GO:0006355|GO:0043565
Pte2g02332 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 77 239 IPR045224 GO:0003700
Pte2g02332 326 ProSiteProfiles 'Homeobox' domain profile. 85 145 IPR001356 GO:0003677
Pte2g02332 326 SUPERFAMILY Homeodomain-like 69 147 IPR009057 -
Pte2g02332 326 ProSitePatterns 'Homeobox' domain signature. 120 143 IPR017970 GO:0000981|GO:0006355
Pte2g02332 326 Coils Coil 137 185 - -
Pte2g02332 326 Gene3D - 85 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02332 Pte-Chr2 42953549 42955904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02332 47 257 Homeobox Transcription Factor Family AT3G01470 42.991 2.29e-42 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pte2g02332 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02332 - - qsu:112006246 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00287 3 2408283 2410222 Pte2g02332 2 42953549 42955904 RCT
Pte2g02332 2 42953549 42955904 Pte2g02332 2 42953549 42955904 RCT