Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02323 ATGGTGAACGTTTCATTTTACCGAAATTATGGGAAGACTTTTAAGAAACCTCGCCGTCCCTATGAGAAAGAACGTCTAGATGCAGAGCTCAAGCTCGTGGGAGAGTATGGACTCCGCTGTAAGAGAGAGCTGTGGAGGGTTCAGTATGTCCTGAGCCGTATCCGTAACAATGCAAGAATGCTTCTGACCCTTGATGAGAAAAATCCACGCAGGATCTTTGAAGGTGAGGCTCTTCTACGCAGGATGTTCCGTTATGGGCTTCTGGATGAAACTCAAAACAAGCTCGATTATGTGCTCGCTTTGACTGTTGAGAACTTCCTTGAGCGTCGCTTGCAAACACTTGTTTTCAAGTCTGGAATGGCAAAGTCAATTCACCATGCTCGTGTTCTCATCAGACAGAGGCATATAAGGGTCGGAAGACAGGTTGTCAACATCCCATCTTTTATGGTGAGGGTGGATTCACAGAAGCACATTGATTTCTCACTTACCAGTCCATTTGGTGGTGGGCGTCCTGGAAGGGTCAAGAGAAAGAACCAAAAGGCTGCTGCTAAGAAGGCTTCTGGTGGAGATGGAGATGAGGAAGATGAGGATTAA 594 0.4646 MVNVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDEKNPRRIFEGEALLRRMFRYGLLDETQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKASGGDGDEEDED* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02323 197 PANTHER 30S 40S RIBOSOMAL PROTEIN 7 184 IPR022801 GO:0003735|GO:0015935|GO:0019843
Pte2g02323 197 Gene3D - 108 166 IPR036986 GO:0003723
Pte2g02323 197 SMART s4_6 109 180 IPR002942 GO:0003723
Pte2g02323 197 ProSitePatterns Ribosomal protein S4 signature. 107 131 IPR018079 GO:0019843
Pte2g02323 197 ProSiteProfiles S4 RNA-binding domain profile. 109 180 - -
Pte2g02323 197 MobiDBLite consensus disorder prediction 163 197 - -
Pte2g02323 197 Pfam S4 domain 109 152 IPR002942 GO:0003723
Pte2g02323 197 FunFam 40S ribosomal protein S9 108 188 - -
Pte2g02323 197 SUPERFAMILY Alpha-L RNA-binding motif 12 159 - -
Pte2g02323 197 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Pte2g02323 197 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Pte2g02323 197 CDD S4 109 153 - -
Pte2g02323 197 NCBIfam 30S ribosomal protein S4 11 166 IPR005710 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02323 Pte-Chr2 42908887 42911960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02323 1 187 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 93.048 1.54e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02323 K02997 - qsa:O6P43_022828 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00305 3 2509368 2511358 Pte2g02323 2 42908887 42911960 RCT
Pte2g02323 2 42908887 42911960 Pte2g02323 2 42908887 42911960 RCT
Pte2g02323 2 42908887 42911960 Pte3g00305 3 2509368 2511358 RCT