Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02309 ATGTTAATGGAGTCTTGGAGCTATGTTTCTCAAGAGAAGGGCTTTTTGTCTGATGAAACAATCTCACCTCCTAGTACACTTGCAAGAAGCAAGAGTACTTTTTGTAACGATATGTTACTCCCAACTCAACAGAACCTTGAAAATCGAGGTTTTAGAGAATTGAGTTTTCCTGAAATGGTCGGAAAACAATTGCCTACGAATCATCCTGCGAGTGATGCGTGGAACAACAAGCTTGGAGATGCTCATGGTGGAAGAGTAATCAATTCAGTTATGGCTGCTCCAAATGGATTTCCTAATGGAGAGGACTCCAATTCAAAGCGCTCAAACTCTGTTGTTGAGTCTAACGGTCGTGACTCATTCATTGATTTGAAATTAGGAAGGTTTGGTGATCAGAGAGATAGCAAGGATTTGAAATTTTCTGAAGTAGCCCCAGTCTCTGTTTTGTCGTCTTCGTCATCATCAACGCCACCAAAGAGGGCAAGAGCATCAGGGGGCCACTCACAGACCGCCTTCTGCCAAGTATACGGCTGTAACAAGGATCTTAGTGGTTCAAAAGACTACCACAAAAGGCATAAAGTTTGTGAGCTTCACTCCAAGACTGCCAAAGTCATTGTGAATGGCATTGATCAAAGATTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGGCATAATGAGCGTCGGAGAAAGCCTCAATTGCATGTTCATTCTGGAAGGTCTGGAAGATTGCTCCAATCATACACTGACAACAGATTTCAAGGGACCTCTCTTGCAACAGCATCTTTCATTTGCCAAGATATACTCCCTAGTAGACTTTTGCATGGTGAGAAGTTGGCTGCAGATGACTGGTTCAGGCCGGTAAAAACTGAAGATGGAGCAAATTACACCAATTTGTCAGCAATTCCTGTCTCAAATGGACAGCCAAATCTGAGATGCTTTGTCCCATCTTTTAATTCTGAAAAGCCGTTTTCCTTTCTTCAGGAAAACGATGCTTCTACCACTGCTGGCAACATATTTGCTGCAAGTAATTGTCAATACACAGCTTCACTCGGAGTTCCAAATTCAGGGCCACGCCCCTTGTTCCATAGCACCTCGTTAGAAAGTGAAGACTTCAATATTTTTGACACAACATCAAACGTCCAGGGATTTTCGGGAATTTTAGACTCTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAAAACAGTTCAGCTCATTCAGCAGGAGTTCTCATGCCCAGTTCCTTCGTCATGCAAAGCAGCCAGAGTCATTATAGCATGAGTCAAGTGTCTGAGAAGGTTACAGGGATGAGCTCACATAATTCTGCAAATGGGGTGCTAAATAAGTTTCCGTCAACAGAAATGATTCCTAGTGATGGTCACCTTGGGGTGGTGATGATATCTGATTGCAGTGACGTCGTTAACTTCAACATATCAGATGAGATTCTCCAAGAAACAGATTTTTCAAATGCCAAAGATCATCTTACCTGCAGAGATGGACCCACCGTCGACTTACTTCAGCTGTCATCACAGCTCCAGCGGGTTGAACAGCGTAGACAAACCGTGCATGTAAAACCAGAAAACTTGCAGCAGAAATATCAGTTAAATGGCTCCTCGGAAGCGAGGTGA 1674 0.4337 MLMESWSYVSQEKGFLSDETISPPSTLARSKSTFCNDMLLPTQQNLENRGFRELSFPEMVGKQLPTNHPASDAWNNKLGDAHGGRVINSVMAAPNGFPNGEDSNSKRSNSVVESNGRDSFIDLKLGRFGDQRDSKDLKFSEVAPVSVLSSSSSSTPPKRARASGGHSQTAFCQVYGCNKDLSGSKDYHKRHKVCELHSKTAKVIVNGIDQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQLHVHSGRSGRLLQSYTDNRFQGTSLATASFICQDILPSRLLHGEKLAADDWFRPVKTEDGANYTNLSAIPVSNGQPNLRCFVPSFNSEKPFSFLQENDASTTAGNIFAASNCQYTASLGVPNSGPRPLFHSTSLESEDFNIFDTTSNVQGFSGILDSGCALSLLSSQSQNSSAHSAGVLMPSSFVMQSSQSHYSMSQVSEKVTGMSSHNSANGVLNKFPSTEMIPSDGHLGVVMISDCSDVVNFNISDEILQETDFSNAKDHLTCRDGPTVDLLQLSSQLQRVEQRRQTVHVKPENLQQKYQLNGSSEAR* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02309 557 MobiDBLite consensus disorder prediction 236 251 - -
Pte2g02309 557 MobiDBLite consensus disorder prediction 146 165 - -
Pte2g02309 557 SUPERFAMILY SBT domain 170 250 IPR036893 GO:0003677|GO:0005634
Pte2g02309 557 Gene3D - 162 233 IPR036893 GO:0003677|GO:0005634
Pte2g02309 557 MobiDBLite consensus disorder prediction 236 256 - -
Pte2g02309 557 MobiDBLite consensus disorder prediction 534 557 - -
Pte2g02309 557 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Pte2g02309 557 MobiDBLite consensus disorder prediction 90 113 - -
Pte2g02309 557 MobiDBLite consensus disorder prediction 98 113 - -
Pte2g02309 557 Pfam SBP domain 172 245 IPR004333 GO:0003677
Pte2g02309 557 MobiDBLite consensus disorder prediction 541 557 - -
Pte2g02309 557 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 93 535 IPR044817 GO:0003677
Pte2g02309 557 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02309 Pte-Chr2 42807530 42811435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02309 121 289 SBP-box Gene Family AT1G69170 52.907 1.96e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte2g02309 SBP 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02309 - - qsa:O6P43_002246 607.446