Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02308 ATGGGCAGGGGAAGGGTGGAGTTGAAGAGGATAGAGAATAAGATCAACAGGCAAGTGACTTTCTCTAAGAGAAGGTCCGGATTGCTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCCGAGGTCGCCTTGATTGTCTTTTCAACCAAAGGCAAGCTCTTCGAGTATTCCAGTGATTCCTGCATGGAGAGAATATTTGAACGTTACGAGAGGTATTCACAAGCGGATAAGCAGATGTTTGCTAATGATCATGAATCAGATGGCAACTGGATGTTGCAACATACGAAGCTGAAGGCGAGGATGGAGGTTTTACAAAAAAACCAAAGGTATTTTAGAGGAGAAGAGCTTGATGGGCTAAGTCTGAAAGAGCTTCAAAATTTGGAACAACAACTTGATTCTTCTCTCAAGCATATAAGATCAAGAAAGGTGAAGGAGAAAGAGAAGGAGCTGGATCAGCAAGCAAAGTGGGAGAAGCAAAATCATACAACGGACAAATCCTCAGTTGCCGTACATCCATTTGAGTCCTTGAACCTTGGTGGTTCTTACATTGCCGGAGGTTATGAGGAAGAAAATGAAGCAAATGCATCCCATTCTCAAGCTAAAGTACTTCTTCCCTCTTGGATGCTTCACAATCCGTCTGGATGA 648 0.4321 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDSCMERIFERYERYSQADKQMFANDHESDGNWMLQHTKLKARMEVLQKNQRYFRGEELDGLSLKELQNLEQQLDSSLKHIRSRKVKEKEKELDQQAKWEKQNHTTDKSSVAVHPFESLNLGGSYIAGGYEEENEANASHSQAKVLLPSWMLHNPSG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02308 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Pte2g02308 215 MobiDBLite consensus disorder prediction 143 165 - -
Pte2g02308 215 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Pte2g02308 215 ProSiteProfiles K-box domain profile. 88 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte2g02308 215 MobiDBLite consensus disorder prediction 143 168 - -
Pte2g02308 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte2g02308 215 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Pte2g02308 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte2g02308 215 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte2g02308 215 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pte2g02308 215 Coils Coil 122 142 - -
Pte2g02308 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte2g02308 215 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Pte2g02308 215 Pfam K-box region 85 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte2g02308 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte2g02308 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte2g02308 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02308 Pte-Chr2 42787192 42790240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02308 1 143 MADS-box Gene Family AT1G26310 71.034 3.22e-72 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte2g02308 K-box 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02308 K09264 - qsu:111991050 286.189