Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02297 ATGGAACCGATGGATATTGTTGGAAAATCAAAGGAAGACGCCTCGCTTCCGAAAGCGACCATGACTAAAATTATCAAGGAGATGTTACCTCCAGATGTACGTGTTGCAAGAGATGCCCAAGATCTTTTGATTGAATGTTGTGTAGTATCTGCCTTTTATGGACTTTTTCTTGCAGAATTTATAAACTTGGTTTCATCAGAATCTAATGAAGTCTGTAGCAGAGAAGAGAAACGAACAATTGCACCAGAGCATGTATTAAAGGCTTTAGAAGTTCTAGGATTTGGAGAGTACATTGAAGAAGTGTATGCAGCATATGAACAGCACAAACTGGAGACCATGGACTCCTTCAGGAGTGTCAAGTGGAGCAATGGCGCAGAGATGACTGAGGAAGAAGCAGTAGCCGAGCAACAAAGGATGTTTGCAGAGGCACGTGCAAGAATGAACGGCGAGATTGCATCCAAGCAGCCAGATCCAAATTAA 480 0.425 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVVSAFYGLFLAEFINLVSSESNEVCSREEKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSFRSVKWSNGAEMTEEEAVAEQQRMFAEARARMNGEIASKQPDPN* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02297 159 PANTHER PROTEIN DR1 HOMOLOG 1 157 IPR044255 -
Pte2g02297 159 SUPERFAMILY Histone-fold 12 150 IPR009072 GO:0046982
Pte2g02297 159 FunFam Negative cofactor 2 beta 6 152 - -
Pte2g02297 159 Gene3D Histone, subunit A 4 154 IPR009072 GO:0046982
Pte2g02297 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 89 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02297 Pte-Chr2 42629248 42632127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02297 1 157 CCAAT-DR1 Transcription Factor Family AT5G23090 81.013 7.55e-90 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte2g02297 CBFD_NFYB_HMF 3.7e-16 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02297 K21751 - mnt:21405090 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02297 2 42629248 42632127 Pte2g02297 2 42629248 42632127 RCT