Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02294 ATGGCAGTTTTGGAAGAACAGGTGCGTTGCAATGTATCTTCAGAGGAAGAGCTTAAGAAGAAACGTAAGAGGAAGAGAAATAAGAAGCAAACCGCGCTTTCGGAATTGGACGGTGACATCGCTGAAGAAGCAGCTGAACCTCCAAAAGAAGAAACCGTGAAAGCAATTGAAGGAATAAAGGAAAAGAAGAGCAAGGAAAATAAGGGAAATGATATGAACGTCGAAGAAGAAGAAACCGTTGGCGATGAGGATAACGAGGACAAAAAAGCAAAGGAGGAGGGAGTGAAAGAGGAAGAAGAAAATATTGAGAAGGTGATGCCCGGTGGGTCAGGGATTATGACCAACAATGCTTTTTCTGAAATCGAGTTGTCTGAACCTACAAGGATGGCAATTGAGGACATGGGATTCAAACACATGACACAGATCCAAGCTAGAGCGATTCCCAGGCTTTTGGAAGGTAAAAATGTTCTTGGAGCAGCGAGGACTGGTTCTGGAAAAACCCTAGCTTTCCTAATACCAGCTGTGGAGTTGTTGCGTAATACTCACTTTTCTCCTCGGAATGGAACGGGCGTTATTGTCATTTGCCCGACAAGAGAGCTTGCAATACAGACTCATGCTGTGGCCAAAGACCTTCTCGATCATCACTCACAAACACTTGGTTTAGTTATTGGTGGTGCTGCCAGAAAAGGAGAAGCTGAACGTTTAGTGAAAGGAGCAAATCTGTTGATTGGAACTCCTGGCCGTCTGCTAGATCACCTTCAAAACACCAAAGGATTTGTATATAAGAACTTGGCGTTTCTCATTATTGATGAAGCTGACCGGATATTGGAAGATAATTTTGAGGAAGAAATGAAGCAAATCATAAAAATCCTACCAAAGGATAGGCAAACAGCATTGTTTTCTGCTACCCAAACCAAGCAGGTTGAAGATCTTGCCCGTTTGTCTTTTAAAGACACTCCAATATATATTGATGTGGATGAAGGGAGAAAGAAGGTCACAAATGATGGATTGGAGCAAGGCTACTGTATTATCCCCTCTGCAAAGCGCTTCACTGTTCTGTACACATTCTTAAAGAGAAACCCTGAAAAGAAAATCATGGTCTTCTTTTCATCTTGTAACTCGGTCAAATTCCATTCAGACCTTCTCAGATACATCGATGTGAAGTGCATGGATATTCACGGGAAGCAAAAGCAACAGAAAAGGACGTCTACGTTTTTTGAATTCTGCAAGGCAGAGAAAGGAATATTACTATGTACTGATGTGGCTGCTCGTGGACTGGACATACCTGCTGTGGACTGGATTGTGCAGTTTGATCCTCCAGATGAACCCAAGGAATACATCCATAGGGTTGGTCGAACAGCTCGCGGGGAAGGTGCCAAAGGACAAGCTTTACTTTTCCTGATTCCTGAAGAACTGCAATTTTTGAAGTATCTGAAGGAAGCAAAAGTTCCGGTCAAGGAATATGAGTTTAATGAAAAGAAGCTGGCTAATGTGCAGTCTCACCTGGAGAAGCTAGTTGAAAACAATTATTATTTGAATAGAGCAGCTAAAGATGCATATAGGTCGTACATTTTGGCATATAATTCACACTCTATGAAAGACGTATTTAATGTCCACCGGCTCGACCTGCAGGCTGTTGCTGCTTCTTTTTGCTTCTCACACCCACCAAAGGTGAGTCTGAATATAGACAGCAACGCTTCCAAGTTTAGGATGAAAAGGCGCAGAGTTGAGGGAAGCAAACATGGATTCGATGCAAGTAATCCTTATGGACAGAGAAAAGAAAACGATAAACGACAATTCGTAAGACACTAG 1812 0.4244 MAVLEEQVRCNVSSEEELKKKRKRKRNKKQTALSELDGDIAEEAAEPPKEETVKAIEGIKEKKSKENKGNDMNVEEEETVGDEDNEDKKAKEEGVKEEEENIEKVMPGGSGIMTNNAFSEIELSEPTRMAIEDMGFKHMTQIQARAIPRLLEGKNVLGAARTGSGKTLAFLIPAVELLRNTHFSPRNGTGVIVICPTRELAIQTHAVAKDLLDHHSQTLGLVIGGAARKGEAERLVKGANLLIGTPGRLLDHLQNTKGFVYKNLAFLIIDEADRILEDNFEEEMKQIIKILPKDRQTALFSATQTKQVEDLARLSFKDTPIYIDVDEGRKKVTNDGLEQGYCIIPSAKRFTVLYTFLKRNPEKKIMVFFSSCNSVKFHSDLLRYIDVKCMDIHGKQKQQKRTSTFFEFCKAEKGILLCTDVAARGLDIPAVDWIVQFDPPDEPKEYIHRVGRTARGEGAKGQALLFLIPEELQFLKYLKEAKVPVKEYEFNEKKLANVQSHLEKLVENNYYLNRAAKDAYRSYILAYNSHSMKDVFNVHRLDLQAVAASFCFSHPPKVSLNIDSNASKFRMKRRRVEGSKHGFDASNPYGQRKENDKRQFVRH* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02294 603 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 268 276 IPR000629 -
Pte2g02294 603 MobiDBLite consensus disorder prediction 1 101 - -
Pte2g02294 603 Coils Coil 11 35 - -
Pte2g02294 603 SMART DUF4217_3 497 560 IPR025313 -
Pte2g02294 603 Gene3D - 55 326 IPR027417 -
Pte2g02294 603 SMART ultradead3 135 340 IPR014001 -
Pte2g02294 603 FunFam RNA helicase 333 563 - -
Pte2g02294 603 Pfam Domain of unknown function (DUF4217) 498 558 IPR025313 -
Pte2g02294 603 CDD SF2_C_DEAD 337 467 - -
Pte2g02294 603 MobiDBLite consensus disorder prediction 575 603 - -
Pte2g02294 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 144 IPR014014 GO:0003724
Pte2g02294 603 CDD DEADc_DDX18 127 324 IPR044773 GO:0003724|GO:0005524
Pte2g02294 603 Gene3D - 338 576 IPR027417 -
Pte2g02294 603 PANTHER RNA HELICASE 62 503 - -
Pte2g02294 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 322 IPR014001 -
Pte2g02294 603 MobiDBLite consensus disorder prediction 30 75 - -
Pte2g02294 603 MobiDBLite consensus disorder prediction 84 101 - -
Pte2g02294 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 479 IPR027417 -
Pte2g02294 603 Pfam Helicase conserved C-terminal domain 351 456 IPR001650 -
Pte2g02294 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 506 IPR001650 -
Pte2g02294 603 Coils Coil 488 508 - -
Pte2g02294 603 SMART helicmild6 376 457 IPR001650 -
Pte2g02294 603 Pfam DEAD/DEAH box helicase 140 311 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02294 Pte-Chr2 42616588 42621199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02294 111 480 Eukaryotic Initiation Factors Gene Family AT3G19760 26.685 4.82e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02294 K13179 - zju:107418893 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02294 2 42616588 42621199 Pte2g02294 2 42616588 42621199 RCT