Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02280 ATGTATGCACCGATTGATGCCAACGCTGACGGCAGTGACCCCATAATTTCATATTCTAACCATCTATTTCTCTACAGTCCTTTTACAAGTGAAATTACCCCCAATCCCCAAGAGAATCCTGCACCTCTTTTCCCTATCTTTGACTTCCACCTCCCCTTTGAAGATCATGATGATTTGTTTTATCATGACCTTTTATTTCACCATCAACCTTTAGCTGAGCAGGCAGCTGATCAAGTGTCTATAGCCAGTGGCATTCAGATTTCAAACCGAGTGCACAGTATGGATCAACATGTAAGAGTGACTTCTACTGGTGACCATGTCCACCAGAAGCAGCACCAGACCCCAAAAAAAAGAACTTCCAAGAGGGACCGTCACAGAAAGATTGACACAGCTAAAGGGCCAAGGGATCGCCGAATCAGACTGTCCGTTGAAGTTGCCAGGAAGTTTTTTGGTTTGCAAGACATGTTGCGTTTTGATAAACCTAGCAGAACAATTGAGTGGTTACTTAATCAAGCCAAATATGAAATCAAGCGGCTTGAAAGAGAAACCAACTTCCCAGTTGGTACCAATGCTGGCTGTTCACCTTCAGAAAGTGAAGTTGTATCAGGCCTGAATCAAGTTACAGCGAGTGCTAGCAATGGCAAACAAGCGGAGGCTAGACCTTCAGAGGAACCTAGAAAAAGTAGGCAGTCCAGGAAGACTGTTTCCCACTCTCGCACAAAGGAGATTAGAGAGAGAGCAAGAGCAAGAGCCAGAGAGAGGACTAAGGAAAAGAATATGAGGAGCCAGGAATTTGCAAAGGAGGAGGGCTCAGGGCATTGCAGTGAGGCAACTGACCACAAGTTCAGTATATTTGGTGAACACGCACGTACCCAATGCCAATATAGCACCAATGGATCGTTAGATGTGAAGTCCAAAGCTCAAGAACGAAGCTTTCAAATAAAGGAGCAATCTGGGGTTTTCCATATGTACCAATGTTCAAGGACTATGAGCAAATGGAATTTACCTTTTTCCTTCGATTCCCTGCACAACCCTCAAACAACACTAGTTAGTCCAGAAAAGGAAGATTTCTTAATTCCCTAA 1083 0.4404 MYAPIDANADGSDPIISYSNHLFLYSPFTSEITPNPQENPAPLFPIFDFHLPFEDHDDLFYHDLLFHHQPLAEQAADQVSIASGIQISNRVHSMDQHVRVTSTGDHVHQKQHQTPKKRTSKRDRHRKIDTAKGPRDRRIRLSVEVARKFFGLQDMLRFDKPSRTIEWLLNQAKYEIKRLERETNFPVGTNAGCSPSESEVVSGLNQVTASASNGKQAEARPSEEPRKSRQSRKTVSHSRTKEIRERARARARERTKEKNMRSQEFAKEEGSGHCSEATDHKFSIFGEHARTQCQYSTNGSLDVKSKAQERSFQIKEQSGVFHMYQCSRTMSKWNLPFSFDSLHNPQTTLVSPEKEDFLIP* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02280 360 Coils Coil 162 182 - -
Pte2g02280 360 MobiDBLite consensus disorder prediction 185 273 - -
Pte2g02280 360 MobiDBLite consensus disorder prediction 219 273 - -
Pte2g02280 360 MobiDBLite consensus disorder prediction 111 125 - -
Pte2g02280 360 ProSiteProfiles TCP domain profile. 121 179 IPR017887 -
Pte2g02280 360 MobiDBLite consensus disorder prediction 187 217 - -
Pte2g02280 360 ProSiteProfiles R domain profile. 241 258 IPR017888 -
Pte2g02280 360 Pfam TCP family transcription factor 119 261 IPR017887 -
Pte2g02280 360 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 83 304 IPR005333 GO:0003700
Pte2g02280 360 MobiDBLite consensus disorder prediction 100 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02280 Pte-Chr2 42467307 42468389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02280 113 255 TCP Transcription Factor Family AT3G18550 39.521 3.72e-23 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pte2g02280 TCP 4.7e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02280 - - qsa:O6P43_023000 192.971