Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02277 ATGGTGAAACCTAAACCATTCCCTTTCAATATCATATCTCACAGTCTCAAATCTTCTCCCTTCCTCTACTCTCGTTCTGATAAACTCATGGTTACTTCAGCTTCCCGATTATTCTGTTTCTCGGTACCTCCATTACCTTCTAATTTCAAACGACCTCTCTCTTTGTCTTTGTCTTGTAGTACATTCTCGACAACCTCCACTCGGTACCCACTTCAATATGAGATGATCATCAGCCACCCAGCTCACTCGGAGTATACCAACCCGAGACAGACACGTATCCGTCCCAGCGGGCTCCGCGGGCAGCCCATTCCAGAGGACTCTCCTGGAAATGAAAATGAAATAGAAGAAGTAGAAGAAGAACGACCTGCTTCGGAATTGGGTGGTTTTGAAAGTTGGGTTGATCGGAAACTGGCTTCTGAGAAGGTAAAACACTTGCCCGAAATGGATAAAGCTAAGAGGAAGTATTTTAATAAGAGAAGAAAGAGGATGTACGGGGCTGATTCAGAGGAAGAGAACCGTAAACCTGAAGAGAACTTTGTGGAGCTCAAGCCCGAGGTTGTGGAGTTTCCTACGTTGCATAAGAGAGAAGAGGAGTTATATTTTTATGATGCCTTTGCTTTTCCTTGGGAGAAAGAGAAGCATTATAAGATGGTGTATCAGTTGGAGAAGAAATATTTTCCTGATCAGTGTCTTGATAAGGCATTTGTTGAACCTGGGGAAACCAATGTTAATGTGAAGAAAGGAAAGGCGAAGACTAAGAAGAAAGAAGAAGAGGTTGGCAATAAATTAGATGATAACAAGTTGGTGTTTTTTGAGGAAAAGGGTAAGAGAGATTTTGGGAAGGAAAGTGGAAAGGATGTTACTGAGAGAAAAGTGGAAGAGTTCTTTAAGTGTTTGAAGAAAGACCCAAATAAGGATGTTTCTGTTAATAAGGGAGAGCCGTATCTTGCAACGAGGAGTACCGGTCTTCCTCCCATATGGGACGGTCCATTTGGGACAGTGGTTTTGGTTAACAAGCCAAAAGGCTGGACTTCATTTACGGTTTGTGGAAAGTTGCGTCGCCTAGTCAAAGTGACAAAGGTTGGACATGCTGGAACTCTTGACCCAATGGCAACTGGTTTACTTATTGTCTGCGTCGGTAAAGCAACAAAATTGGTAGAAAGATATCAACATATGATCAAAGGTTACAGTGGTGTTTTTCGACTTGGAGAGGCTACTTCAACACTGGACGCTGATTCACCAGTCATTCAACGTGAGCCCTGGGAGCACATCAGAGATGAAGACATACGGAAAACTGCTTTATCCTTTTGTGGGGATACCTGGCAAGTTCCACCAATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAAATGTATGAGAAAGCAAGGAGAGGAGAAAGTGTTGAGCTTTCACCGAGACAAATCTCAATTTTCCAGTTTGATATTGAGCGTAGCCTAGATAACAGACAGAACTTAATTTTTAGGGTAATATGTTCAAAAGGGACATATATCCGGTCATTGTGCGCCGATTTTGGGAAGGCTCTTAGCAGGTGA 1551 0.4262 MVKPKPFPFNIISHSLKSSPFLYSRSDKLMVTSASRLFCFSVPPLPSNFKRPLSLSLSCSTFSTTSTRYPLQYEMIISHPAHSEYTNPRQTRIRPSGLRGQPIPEDSPGNENEIEEVEEERPASELGGFESWVDRKLASEKVKHLPEMDKAKRKYFNKRRKRMYGADSEEENRKPEENFVELKPEVVEFPTLHKREEELYFYDAFAFPWEKEKHYKMVYQLEKKYFPDQCLDKAFVEPGETNVNVKKGKAKTKKKEEEVGNKLDDNKLVFFEEKGKRDFGKESGKDVTERKVEEFFKCLKKDPNKDVSVNKGEPYLATRSTGLPPIWDGPFGTVVLVNKPKGWTSFTVCGKLRRLVKVTKVGHAGTLDPMATGLLIVCVGKATKLVERYQHMIKGYSGVFRLGEATSTLDADSPVIQREPWEHIRDEDIRKTALSFCGDTWQVPPMFSAIKVGGEKMYEKARRGESVELSPRQISIFQFDIERSLDNRQNLIFRVICSKGTYIRSLCADFGKALSR* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02277 516 Pfam TruB family pseudouridylate synthase (N terminal domain) 353 503 IPR002501 GO:0006396
Pte2g02277 516 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 224 515 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte2g02277 516 CDD PseudoU_synth_EcTruB 334 514 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte2g02277 516 FunFam tRNA pseudouridine synthase B 328 516 - -
Pte2g02277 516 MobiDBLite consensus disorder prediction 86 124 - -
Pte2g02277 516 NCBIfam tRNA pseudouridine(55) synthase TruB 333 514 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte2g02277 516 Hamap tRNA pseudouridine synthase B [truB]. 331 515 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte2g02277 516 SUPERFAMILY Pseudouridine synthase 333 514 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte2g02277 516 Gene3D Pseudouridine synthase 329 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02277 Pte-Chr2 42417090 42424708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02277 334 507 NAC Transcription Factor Family AT3G57150 31.638 2.05e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02277 K03177 - zju:107415230 663.299