Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02268 ATGTATTCTTTCAATTCTGGTTTGCACCTTCTTATTGGTAATGGAATGATCGCTGGTTTTCATTCTTTTGGGAAAAATTGGCATGGGGCTGATTTCTTTTGTTTCTTTTGGACAAGGTTGGACGTCTATATATATGACTATCTTGTGAAAAGGAAGTTACATGCTACTGCTAAGGCATTTCAAGCTGAAGGAAAGGTATCAACAGACCCTGTGGCAATAGATGCACCTGGAGGTTTTCTTTTTGAGTGGTGGTCCGTCTTCTGGGACATATTTATTTCTAGGACAAATGAGAAGCATTCGGAACCAGCTACATCTTACATTCAGACTCAGGTAAGCAAGGCCAGGGAACTTCAGAAGAAACAGCAGCAAGAACCTCAGAATCCTCAGCAGCATCAACAAATGCAAATGCAGCTCTTGATGCAAAGACATGCTCAGCAGCAGCAAAGGGATGGGACACAGCTTGTTAATGGTAGCAGCAGTAGTCTTGTTGGCGATGACCCTATGATGAGGCAAACACAAGGAACTGCAAACTCAGTGGCAGCCAAAATGTATGAGGAGAGGTTAAAGCTTCCATCTCAAAAAGATGCTTTGGATGATGCTACTAACAAGAGGGCAGGGGACAATGTCAGTCAGCTTCTGGATCATCCTAATCACGCTTCATTGTTTAATGCAGCTGCTGGCCAGCCTCCTGGACAAACACTAATAGGTCGAGGTATACCTGGAAATCTTCAACAAGTGCAAAATCGGAATCAACAGCTTTCTGGGAGCACACCAGATATGAAGAATGAGATGAATCCAATGGTGAGCCCACACACCAATGGTTCTGAAGGATCTGTAATTGGAGTTCATGGTTCTAATCAGGGGAGCAGCAATATAACTCTGAAAGGATGGCCTTTGACGGGATTTGAGCAGCTTCGCTCTCTCCAGCAAAAGACAATGACACAATCTCCTCAGTCCTTTAATCAGCTGCAGCTACAACAACAGCTTATGCTCCGTGCACAACAGCAAAGTTTGGCATCATCATCTGCCAATGAATTAGAAAACAGGAGAATAAGAATGCTTATTAACAATCAAACTGTGGGGGTTGCCAAGGATGGCTTAAGCAATGTTGGTGACTTAGTTCCAAATATGGGATCACCAATGCAAGCTGGTTGCTCTGTATTGCCTCATACTGACTCAGATATGCTTCTCAAGTTACATCTGCAGCAAAACAGTCACCAGCAGCAACAATTTTCACAACATCCTCTTTCAAGTCAGCAATCTCAAAACCATCTCCAGCAAACAGAGAAGATCATTGCTGGTGGTAGCATGTCAGCTGATGGTAACTTGTCGAACGCATTTCAAGGAAATGATCAGGCTTCAAAAAATCAAATTGGACGAAAGAGAAAGCAGACAGTGTCATCTTCAGGTCCTGCCAACAGTTCTGGTACTGCAAACACGGTTGGACCATCCCCTAGTTCACCATCCACACCTTCAACACACACGCCAGGAGATGCAATGTCAATGCCAACCCTGCAGCAAAATGCATCTTCCAAATCTTTGCTCATGTTTGGTTCTGATGGTTTGGGTTCACTCTCAGCACAGAATCAAATGGCCGATATAGACCGATTTGTGGGTGATGGCTCCTTGGATGACAATATTGAGTCTTTTTTATCTCCTGATGGAGGAGACCCTAGAGATGGAGTTGGTAATTGTCAGGATATGGGTAAAGGCTTCACCTTTAAAGAGATCCAGCTTATTTCTGCAAGTTCCAGTAAAGTTGAGTGCTGTGACTTTTCATCAGATGGGAAATTACTTGCTACAGGTGGCCATGATAGAAAGGTAGCTGTTTCCTTATGGTGCACGGAAACATTTGCTTTGAAGTCTAATCTAGAAGAGCATTCTCAGTGGATTACTGATGTGAGATTCAGTCCAAGCATGTCTCGTCTTGCTACATCTTCTGCTGACAGAACTGTTAGGATTTGGGATACTGATAATCCTGGCTATTCTCTCCGTACGTTCTCTGGACATTCAACTACTGTCATGTCACTGGACTTCCACCCAACTAAAGAAGATCTCATCTTTTCTTGTGATAATAATAACGAGATTAGATATTGGGGTATTAAGCATGGTAGCATTGCTGGGGGTTTCAAGGGTGGGGCAACACAGATGAGATTTCAACCTCGTCATGGAAGGCTTCTAGCAGCTGCAATGGAGAATCTTATATCCATTCTTGATGTTGAGACTTTAGCTTGTAGGCTTAAACTTCAGGGTCACAAAAACCTCGTTCATTCTATTTGCTGGGATTCTTCTGGTGATTATCTTGCATCCGTGAGTGATGAAATGGTAAGAATCTGGACAGTCGGATCTAGTAGCAAAGGGGAATGCGTTCATGAGTTGAATTCAGCCGGCAACAAATTCAACACCTGTGCTTTCCATCCTTCTTATCCTTCTCTGTTGGTTATTGGTTGTTACGAGACTCTGGAGCTTTGGAACTTCGGTGAGAACAAGACAATGACTATACGTGCCCATGACAAGTTAGTATCTTCCTTGGCTGTGTCAAATGTTTCTGGGTTAGTGGCCTCAGCCAGTCATGACAAGTGCGTGAAACTCTGGAAGTAA 2601 0.4344 MYSFNSGLHLLIGNGMIAGFHSFGKNWHGADFFCFFWTRLDVYIYDYLVKRKLHATAKAFQAEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEPATSYIQTQVSKARELQKKQQQEPQNPQQHQQMQMQLLMQRHAQQQQRDGTQLVNGSSSSLVGDDPMMRQTQGTANSVAAKMYEERLKLPSQKDALDDATNKRAGDNVSQLLDHPNHASLFNAAAGQPPGQTLIGRGIPGNLQQVQNRNQQLSGSTPDMKNEMNPMVSPHTNGSEGSVIGVHGSNQGSSNITLKGWPLTGFEQLRSLQQKTMTQSPQSFNQLQLQQQLMLRAQQQSLASSSANELENRRIRMLINNQTVGVAKDGLSNVGDLVPNMGSPMQAGCSVLPHTDSDMLLKLHLQQNSHQQQQFSQHPLSSQQSQNHLQQTEKIIAGGSMSADGNLSNAFQGNDQASKNQIGRKRKQTVSSSGPANSSGTANTVGPSPSSPSTPSTHTPGDAMSMPTLQQNASSKSLLMFGSDGLGSLSAQNQMADIDRFVGDGSLDDNIESFLSPDGGDPRDGVGNCQDMGKGFTFKEIQLISASSSKVECCDFSSDGKLLATGGHDRKVAVSLWCTETFALKSNLEEHSQWITDVRFSPSMSRLATSSADRTVRIWDTDNPGYSLRTFSGHSTTVMSLDFHPTKEDLIFSCDNNNEIRYWGIKHGSIAGGFKGGATQMRFQPRHGRLLAAAMENLISILDVETLACRLKLQGHKNLVHSICWDSSGDYLASVSDEMVRIWTVGSSSKGECVHELNSAGNKFNTCAFHPSYPSLLVIGCYETLELWNFGENKTMTIRAHDKLVSSLAVSNVSGLVASASHDKCVKLWK* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02268 866 CDD WD40 580 866 - -
Pte2g02268 866 ProSiteProfiles LIS1 homology (LisH) motif profile. 36 68 IPR006594 GO:0005515
Pte2g02268 866 SUPERFAMILY WD40 repeat-like 573 866 IPR036322 GO:0005515
Pte2g02268 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 702 IPR001680 GO:0005515
Pte2g02268 866 Pfam WD domain, G-beta repeat 745 779 IPR001680 GO:0005515
Pte2g02268 866 Pfam WD domain, G-beta repeat 623 656 IPR001680 GO:0005515
Pte2g02268 866 Pfam WD domain, G-beta repeat 829 866 IPR001680 GO:0005515
Pte2g02268 866 Pfam WD domain, G-beta repeat 663 699 IPR001680 GO:0005515
Pte2g02268 866 Pfam WD domain, G-beta repeat 583 608 IPR001680 GO:0005515
Pte2g02268 866 ProSitePatterns Trp-Asp (WD) repeats signature. 643 657 IPR019775 -
Pte2g02268 866 PANTHER TRANSCRIPTION ACTIVATOR MSS11 118 866 - -
Pte2g02268 866 SMART WD40_4 617 656 IPR001680 GO:0005515
Pte2g02268 866 SMART WD40_4 786 825 IPR001680 GO:0005515
Pte2g02268 866 SMART WD40_4 573 614 IPR001680 GO:0005515
Pte2g02268 866 SMART WD40_4 827 866 IPR001680 GO:0005515
Pte2g02268 866 SMART WD40_4 660 700 IPR001680 GO:0005515
Pte2g02268 866 SMART WD40_4 742 780 IPR001680 GO:0005515
Pte2g02268 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 749 781 IPR001680 GO:0005515
Pte2g02268 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 624 659 - -
Pte2g02268 866 MobiDBLite consensus disorder prediction 102 170 - -
Pte2g02268 866 Gene3D - 552 708 IPR015943 GO:0005515
Pte2g02268 866 Gene3D - 709 866 IPR015943 GO:0005515
Pte2g02268 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 702 - -
Pte2g02268 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 624 659 IPR001680 GO:0005515
Pte2g02268 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 834 866 - -
Pte2g02268 866 MobiDBLite consensus disorder prediction 403 504 - -
Pte2g02268 866 SMART Lish 36 68 IPR006594 GO:0005515
Pte2g02268 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 834 866 IPR001680 GO:0005515
Pte2g02268 866 Pfam LisH 39 64 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02268 Pte-Chr2 42367952 42373487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02268 576 865 Miscellaneous Gene Families AT5G08390 25.083 6.24e-16 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pte2g02268 WD40 0.0061 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02268 - - pvy:116116977 1048.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02268 2 42367952 42373487 Pte2g02268 2 42367952 42373487 RCT