Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02258 ATGGATAAGAAAAGAGTGGCCGTTCCTCTTGTATGCCATGGTCATTCCCGGCCAGTAGTGGATCTGTTTTACAGTCCAGTTACGCCAGATGGCTTCTTCCTCATCAGTGCCAGCAAGGATTCTAGTCCCATGCTCAGAAATGGAGAGACAGGGGATTGGATTGGAACTTTTGAAGGGCACAAGGGTGCAGTGTGGAGCTGCTGTCTTGACACTAATGCCTTGCATGCTGCTACGGGATCAGCTGATTTCTCTGCAAAAGTTTGGGATGCATTGACTGGAGATGAACTGCACTCATTTGAGCACAAGCACATTGTTAGGGCATGTTCTTTTTCTGAGGATACCAAACTTTTACTTACTGGAGGGTTGGAGAAAGTCCTCCGCATTTATGATTTGAATCGCCCTGATGCACCTCCAAGAGAAGTCGATAAATCTCCTGGTTCAATTAGAACTGTGTCGTGGCTTCATAGTGATCAGACAATATTGAGTTCTTGTACTGATATGGGGGGTATCAGGTTGTGGGATGTTAGAAGTGGTGAAATGGTGCAGACACTTGAAACCAAGTCTTCCGTTACCAGTGTGGAAGTCAGTCAAGATGGTCGTTATATCACCACCACTGATGGTTCTTCTGTTAAGTTTTGGGATGCAAATTACTACGGGTTGATAAAGAGCTATGATCTGCCTTGCGCTGTGGAGTCGGCTTCTTTGGAACCGAAGTACGGGAATAAGTTCATTGCTGGAGGAGAAGACATGTGGGTTCATGTCTTTGATTTCCACACTGGTGATGAGATTGCCTGTAACAAGGGTCACCATGGGCCTGTGCATTGTGTTCGCTTCTCTCCTGGGGGTGAATCGTATGCCTCAGGATCGGAGGATGGGACTATCAGAATATGGCAGACAGGGCCATTAACTCGAGACGAGTCTGAAGCATTATCCACAAATGGACCAATCAATAAGGTGAAGGCAGTTTCTGAAGAGGTCTCGCGTAAGATCGAGGGGTTTCATATTTCAGATGAGGGGAAGTCCAAGGAGAAGGAAGAGGCAGCTAAGGATTAG 1053 0.4663 MDKKRVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALHAATGSADFSAKVWDALTGDELHSFEHKHIVRACSFSEDTKLLLTGGLEKVLRIYDLNRPDAPPREVDKSPGSIRTVSWLHSDQTILSSCTDMGGIRLWDVRSGEMVQTLETKSSVTSVEVSQDGRYITTTDGSSVKFWDANYYGLIKSYDLPCAVESASLEPKYGNKFIAGGEDMWVHVFDFHTGDEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTRDESEALSTNGPINKVKAVSEEVSRKIEGFHISDEGKSKEKEEAAKD* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02258 350 CDD WD40 54 299 - -
Pte2g02258 350 MobiDBLite consensus disorder prediction 331 350 - -
Pte2g02258 350 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 7 341 - -
Pte2g02258 350 SMART WD40_4 92 130 IPR001680 GO:0005515
Pte2g02258 350 SMART WD40_4 217 256 IPR001680 GO:0005515
Pte2g02258 350 SMART WD40_4 5 47 IPR001680 GO:0005515
Pte2g02258 350 SMART WD40_4 259 298 IPR001680 GO:0005515
Pte2g02258 350 SMART WD40_4 50 89 IPR001680 GO:0005515
Pte2g02258 350 SMART WD40_4 177 214 IPR001680 GO:0005515
Pte2g02258 350 SMART WD40_4 134 174 IPR001680 GO:0005515
Pte2g02258 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Pte2g02258 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 57 89 - -
Pte2g02258 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Pte2g02258 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Pte2g02258 350 SUPERFAMILY WD40 repeat-like 4 301 IPR036322 GO:0005515
Pte2g02258 350 Gene3D - 9 318 IPR015943 GO:0005515
Pte2g02258 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Pte2g02258 350 Pfam WD domain, G-beta repeat 180 214 IPR001680 GO:0005515
Pte2g02258 350 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Pte2g02258 350 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Pte2g02258 350 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Pte2g02258 350 FunFam Serine-threonine kinase receptor-associated protein 8 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02258 Pte-Chr2 42315732 42319203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02258 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 28.931 4.06e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02258 K13137 - qsu:111987820 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02258 2 42315732 42319203 Pte2g02258 2 42315732 42319203 RCT