Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02234 ATGGTGCAGTCGTACAGAGGAGTCAGACAACGCCATTGGGGTTCTTGGGTATCTGAAATTCGCCATCCACTTCAGAAGAGGAGGGTTTGGCTAGGCACATTTGAATCAGCCGAAGAAGCAGCCAAAGCCTATGACCAAGCAGCCATTTTAATGAGCGGCAGAAACGCGAAAACCAACTTCCCAATATCTCAAACATCGTGCGGTGAACCCAAACCAGTTGAGGATTCCCCATCTTCACCAAAAGGTCTATCAGAGATACTCCATGCAAAGCTTAGGAAGTGCAGTAAGGCGCCATCCCCATATATGACTTGCTTGAGGCTTGACACAGAGAATTCTTATATCGGAGTGTGGCAAAAGCGTGCAGGCCAACGTTCTGATGCCAATTGGGTTATGACTGTCAAGCTAGGAAAGAATCATTTCAGCAATGCCGATGGCAAGGATAGGGATTGTACCTCCGCTTCACTTGATCATGATGATCCGTCTCCACATGCAACTGAGAACCAGGAAGTGAGAGCAGAAATGGATGAGGAGGAGAGGATAGCACTTCAAATGATAGAAGAACTTCTTAATCGGAACAGCCCTAACCACCCTTCTTTTGATATTCAAGCTGATGAAGCAGGAGACAGTTTTTAA 633 0.4645 MVQSYRGVRQRHWGSWVSEIRHPLQKRRVWLGTFESAEEAAKAYDQAAILMSGRNAKTNFPISQTSCGEPKPVEDSPSSPKGLSEILHAKLRKCSKAPSPYMTCLRLDTENSYIGVWQKRAGQRSDANWVMTVKLGKNHFSNADGKDRDCTSASLDHDDPSPHATENQEVRAEMDEEERIALQMIEELLNRNSPNHPSFDIQADEAGDSF* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02234 210 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 160 - -
Pte2g02234 210 Gene3D AP2/ERF domain 4 63 IPR036955 GO:0003700|GO:0006355
Pte2g02234 210 FunFam Ethylene-responsive transcription factor 2 3 62 - -
Pte2g02234 210 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Pte2g02234 210 Coils Coil 167 187 - -
Pte2g02234 210 PRINTS Ethylene responsive element binding protein signature 5 16 IPR001471 GO:0003700|GO:0006355
Pte2g02234 210 PRINTS Ethylene responsive element binding protein signature 27 43 IPR001471 GO:0003700|GO:0006355
Pte2g02234 210 MobiDBLite consensus disorder prediction 189 210 - -
Pte2g02234 210 SMART rav1_2 4 67 IPR001471 GO:0003700|GO:0006355
Pte2g02234 210 MobiDBLite consensus disorder prediction 60 82 - -
Pte2g02234 210 Pfam AP2 domain 5 52 IPR001471 GO:0003700|GO:0006355
Pte2g02234 210 SUPERFAMILY DNA-binding domain 4 63 IPR016177 GO:0003677
Pte2g02234 210 ProSiteProfiles AP2/ERF domain profile. 4 61 IPR001471 GO:0003700|GO:0006355
Pte2g02234 210 MobiDBLite consensus disorder prediction 140 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02234 Pte-Chr2 42148135 42148984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02234 1 192 AP2-EREBP Transcription Factor Family AT1G15360 57.843 2.72e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte2g02234 AP2 4.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02234 - - jre:108995608 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02234 2 42148135 42148984 Pte3g01124 3 9609028 9611491 RCT
Pte2g02234 2 42148135 42148984 Pte2g02234 2 42148135 42148984 RCT