Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02227 ATGGCTTTCCTGAGTAAAGTTGGGAATATACTGAGGCAGACTGTAAGCAGGCAGTTCAACTCAGAACTTGGTTTCACTCCTTCCATTTACCAGTCAATAAGATGCATGTCATCTTCTCCTAGCTCCAAACTTTTTATCGGAGGCTTATCGTTTAATACTGATGAACCATCTTTGAGTCAAGAGTTCGGAAAATATGGCGAAATTGTAGATGCAAGAATAATTCACGACCGGGAGACTGGTAGGTCTAGAGGATTTGGTTTTGTTACTTTCACTAATGTTGAGGAGGCATCAAGTGCCATTCAGGCTCTAGATGGAAAGGAACTTCATGGTCGGGTAGTGAGAGTAAATTATGCCAATGAACGGCCGCGTACATATGATGGTGGATACAACAATGCACAATATGGGGGTGGTGGTGGATATGGCAATGCCCCATATGGTGGTGCTGGTGGAGGTAGTGGCTTCAGTGGTGGATATGGTAATGCCTCGTATGATGGTGCTGGTGGAGGTGGCAGCTATGGAGATGGAGGTGCTTACAGTAGTGGTGCTGCTGGAGGATATGGTAGTGGCTATAATGCAGGAAGCAATTATGGAGGTCCTGCTGCTGGAGGCAATCATGCAAGTGGAGGTAACACCAATAATTATGGTGGCAACGGCTATAGAATGGAAGGCATTGGTGGTAGCGGTGGTAGTTATGGGAATGATGGCAGTTTTGGTGGTGTTGGAGGGAGTGATAATCTGGGCAATGCTGGTGGTTTTGGTGGCTGCGATAACTTTGCCACTGGTGTGGGTTATGATGCTAATGGAGCAGGTGCCAAAGATAGCTTTGCTACTGGAGGATATGATGACAACAATGGACCAGGATATGGCAGCAATCTTAACCATGCTGGAGATGATGCTGATCCATTGGAAGGAAACTACGGAGATGTCAGCGAGAAAGGCAATTTTGCTAATAGGGCGTGA 960 0.4635 MAFLSKVGNILRQTVSRQFNSELGFTPSIYQSIRCMSSSPSSKLFIGGLSFNTDEPSLSQEFGKYGEIVDARIIHDRETGRSRGFGFVTFTNVEEASSAIQALDGKELHGRVVRVNYANERPRTYDGGYNNAQYGGGGGYGNAPYGGAGGGSGFSGGYGNASYDGAGGGGSYGDGGAYSSGAAGGYGSGYNAGSNYGGPAAGGNHASGGNTNNYGGNGYRMEGIGGSGGSYGNDGSFGGVGGSDNLGNAGGFGGCDNFATGVGYDANGAGAKDSFATGGYDDNNGPGYGSNLNHAGDDADPLEGNYGDVSEKGNFANRA* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02227 319 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Pte2g02227 319 Gene3D - 34 148 IPR012677 -
Pte2g02227 319 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 142 - -
Pte2g02227 319 SUPERFAMILY RNA-binding domain, RBD 35 132 IPR035979 GO:0003676
Pte2g02227 319 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Pte2g02227 319 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 213 - -
Pte2g02227 319 MobiDBLite consensus disorder prediction 277 319 - -
Pte2g02227 319 SMART rrm1_1 43 116 IPR000504 GO:0003723
Pte2g02227 319 CDD RRM2_NsCP33_like 43 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02227 Pte-Chr2 42074187 42076941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02227 42 122 Eukaryotic Initiation Factors Gene Family AT4G34110 39.506 2.57e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02227 K12741 - qsa:O6P43_022912 197.978