LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g02219	ATGGAGACCGCGAGAAAAGTGAAAGATGTCTCTCCTCACGAGTTCGTCAAAGCTTACGCTGCTCACCTTAAACGCTCCGGAAAGGTTGAGCTTCCGGATTGGACTGATATTGTGAAGACTGGGAAATTGAAGGAGCTTGCTCCTTATGATCCTGATTGGTACTATACTAGAGCTGCGTCCATGGCTAGGAAGATTTATTTGAGGGGTGGCCTTGGTGTCGGTGCATTCAGACGGATTTACGGCGGAAGCAAGAGAAACGGCAGTCGTCCTCCTCACTTCTGTAAGAGCAGTGGTTCTGTTGCTCGGCACATACTCCAACAATTGCAAAAGATGAATATCGTCGAGGTTGATGTGAAGGGTGGGAGAAGAATTACATCCAGTGGCCAGAGGGATCTTGATCAAGTTGCTGGAAGGATAGCAGTTGTCGCTCCTTGA	435	0.4851	METARKVKDVSPHEFVKAYAAHLKRSGKVELPDWTDIVKTGKLKELAPYDPDWYYTRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGSVARHILQQLQKMNIVEVDVKGGRRITSSGQRDLDQVAGRIAVVAP*	145

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g02219	144	FunFam	40S ribosomal protein S19	2	143	-	-
	Pte2g02219	144	Gene3D	-	1	143	IPR036388	-
	Pte2g02219	144	PANTHER	40S RIBOSOMAL PROTEIN S19	3	140	IPR001266	GO:0003735\|GO:0005840\|GO:0006412
	Pte2g02219	144	SUPERFAMILY	"Winged helix" DNA-binding domain	6	140	IPR036390	-
	Pte2g02219	144	ProSitePatterns	Ribosomal protein S19e signature.	90	109	IPR018277	GO:0003735\|GO:0005840\|GO:0006412
	Pte2g02219	144	SMART	Ribosomal_S19e_2	6	142	IPR001266	GO:0003735\|GO:0005840\|GO:0006412
	Pte2g02219	144	Pfam	Ribosomal protein S19e	6	139	IPR001266	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g02219	Pte-Chr2	41974311	41975986	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g02219	1	141	Cytoplasmic Ribosomal Protein Gene Family	AT3G02080	88.652	3.91e-94	266

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g02219	K02966		-	pop:18105726	271.937

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