Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02204 ATGTCGCGAGTCTACGTGGGAAATTTGGATTCACGTGTCACTGAACGTGAGCTTGAAGATGAATTCCGTGTCTTTGGTACTATACGGAGTGTTTGGGTTGCGCGAAGACCACCTGGTTATGCGTTTATTGACTTTGATGACCGAAGGGATGCACAGGATGCTATTCGTGAATTGGACGGTAAGAATGGTTGGAGAGTAGAACTTTCTCATAACTCCAGAGGAGGAGGAGGAGGTGGCGGTGGTGGTCGTGGTGGGGGTCGTGGGAGATCTGGTGGTTCTGATTTGAAATGCTATGAGTGTGGTGAACCGGGACATTTTGCTCGTGAGTGCCAGTCTCGTGGTGGCTCTGGTAGACGTCGTAGCCGTAGTCCAGTGAGATTTCGCAGGAGCCCTAGTTATGGTCGAAGGAGTTATAGTCCTCGCGGCAGGTCTCCAAGACGTCGCAGTCCATCTCCTAGAAAACGCAGTTATAGCAGGTCACCTGGTTATCGTGGGCGTGAGGATCTACCATATGCTAATGGGAATGGACTTAAAGACAGACGCCGAAGCAGGAGTTAA 558 0.5072 MSRVYVGNLDSRVTERELEDEFRVFGTIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECQSRGGSGRRRSRSPVRFRRSPSYGRRSYSPRGRSPRRRSPSPRKRSYSRSPGYRGREDLPYANGNGLKDRRRSRS* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02204 185 CDD RRM_SRSF3_like 3 71 - -
Pte2g02204 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Pte2g02204 185 SMART rrm1_1 3 69 IPR000504 GO:0003723
Pte2g02204 185 Gene3D - 95 158 - -
Pte2g02204 185 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Pte2g02204 185 FunFam Serine/arginine-rich splicing factor RSZ22A 93 153 - -
Pte2g02204 185 Gene3D - 1 94 IPR012677 -
Pte2g02204 185 SUPERFAMILY RNA-binding domain, RBD 3 90 IPR035979 GO:0003676
Pte2g02204 185 Pfam Zinc knuckle 96 111 IPR001878 GO:0003676|GO:0008270
Pte2g02204 185 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 163 - -
Pte2g02204 185 MobiDBLite consensus disorder prediction 140 154 - -
Pte2g02204 185 SUPERFAMILY Retrovirus zinc finger-like domains 78 115 IPR036875 GO:0003676|GO:0008270
Pte2g02204 185 MobiDBLite consensus disorder prediction 66 185 - -
Pte2g02204 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Pte2g02204 185 FunFam serine/arginine-rich splicing factor RSZ22-like 1 95 - -
Pte2g02204 185 ProSiteProfiles Zinc finger CCHC-type profile. 96 112 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02204 Pte-Chr2 41884919 41889049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02204 4 73 Eukaryotic Initiation Factors Gene Family AT1G71770 36.842 2.21e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02204 K12896 - aew:130757244 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02204 2 41884919 41889049 Pte2g02204 2 41884919 41889049 RCT