Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02196 ATGCTAATTTCACGCAGATTTGATAGGTTCACATCAAGGTCGATGGATGACTATACTGGTAAAAGAGCTATTGTTGGAGGGCTACTCTCTAGAAAGGGGTCTGGTATTGCGTCTAGAGATGCTGCTAACAATAGGGATCAAAATGCTCAACTTTGCAACCGTCCTGGTTGCAGTGTAAGCGTCAACTCTCCTAAAGGTGTCCAAAAAGGTACTGAAAAAGGTAAATCTCTGAGGCCATCTAACCGTTCCTCCCCAAGTGGCAGAGAAGTTATTGGAACTTCTTCTGGAGCTTACTCTGGGAAAAGTAACCCTAGAAAATTTATGAAAGAACGAAAGAAAACACTGTCCTCACATTTGGAAATAGATTCATCTGAAACTAGTAGTGTGCAAGATGAACCAGAAGTTTTGGAGATCACCTCTCATCCTGAGAAAATAGAGAAAGGCCTTCCAGCCATATCAGAAATGGCACACTCAAGTAATGCAATTGTATTGGAAGTAGGAAGTTCTAGTGTAGTGTCTAAAAAGAGAACAAATAATTTTAACCAAAGGAATGGATTGCAGAGTCAAGATACTGGGGTTGGAAGTTCTATTCCTTCGGGGTCTAGAAGCACTGGCCAGATGACACATGCTGGTACAAATAGATACGGTTTAGGGAACTTCAGATGCAATTCTATATCTGATGTCTTGCCCCCAGGATGTTCCTCTTCAGATTCAAACCTCAATAAAAGGAAAAATATTGTAAAAAAAGTAAACCGCGATGGTGAAAGTGGCTCTGTTGCTCGAGGGAAGAAAATAATTGGATCAACATTAGAAGGACGGAATGCCAGCTCCAGAAATGGTATTTCTATCAATGAGTCAAGAAGATCCAGAAACACCCCTCCCAACAGGGATACCACAGTGACCTCATTTAGAATGCGACAAGCAAATACTGGTCAGACTAGATCTAGGCTCTCAAATCAAGCGAACAAAAATTCTGGGTCACTAAACAGTAGCCCTTTCATGATATCTCCTAATCATCCTGGCGACCTCAATACTGGCGCTCTATCACTTCAGGTTTCTGCAGACGCTCCCATAGGTCATCCAGTTTCTTACGCCCTGCCAGGAAGGAGTGATCGGGCTATTTCAATAACCAGTCCTGCGGAATTTGGCACCAACCGTAGCCTGATAGGTCGGGATAACATTAGACGATATAACATGGATGGAATTGCGGAGATGTTGTTGGCTCTCGAGAGGATTGAACAAGATGAAGAACTTACGCATGAGCAAATCTTAGTTCTGGAGACCAATTTGCTCCTGAACAGTCTAACATTCTATGATCAGCATAGGGACTTGAGACTGGACATTGATAATATGTCTTATGAGGAATTGTTAGCTCTGGAAGAGAGGATGGGTACTGTAAGCACAGCACTTACAGAGGAAGCATTGGAAGAATCTTTGAAGAAAAGCGTATATCAGTCTGAACTATCAAATGATGAAACCAAGGGCTGTTATCGGGATGATGATGATGATAATAAGTGCAGTATTTGCCAGGAAGAATATGTGGTTGGAGATGAAGTTGGAAGTTTACAATGTGAGCACAGGTATCATGTAGATTGTATACAACAGTGGCTTCGGTTGAAAAATTGGTGTCCCACATGCAAAGCATCAGCAGCTCCCTCTAAATCTGATCCACTTTCATGA 1680 0.4214 MLISRRFDRFTSRSMDDYTGKRAIVGGLLSRKGSGIASRDAANNRDQNAQLCNRPGCSVSVNSPKGVQKGTEKGKSLRPSNRSSPSGREVIGTSSGAYSGKSNPRKFMKERKKTLSSHLEIDSSETSSVQDEPEVLEITSHPEKIEKGLPAISEMAHSSNAIVLEVGSSSVVSKKRTNNFNQRNGLQSQDTGVGSSIPSGSRSTGQMTHAGTNRYGLGNFRCNSISDVLPPGCSSSDSNLNKRKNIVKKVNRDGESGSVARGKKIIGSTLEGRNASSRNGISINESRRSRNTPPNRDTTVTSFRMRQANTGQTRSRLSNQANKNSGSLNSSPFMISPNHPGDLNTGALSLQVSADAPIGHPVSYALPGRSDRAISITSPAEFGTNRSLIGRDNIRRYNMDGIAEMLLALERIEQDEELTHEQILVLETNLLLNSLTFYDQHRDLRLDIDNMSYEELLALEERMGTVSTALTEEALEESLKKSVYQSELSNDETKGCYRDDDDDNKCSICQEEYVVGDEVGSLQCEHRYHVDCIQQWLRLKNWCPTCKASAAPSKSDPLS* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02196 559 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 552 IPR013083 -
Pte2g02196 559 SUPERFAMILY RING/U-box 505 552 - -
Pte2g02196 559 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 80 551 IPR045191 GO:0061630
Pte2g02196 559 SMART ring_2 506 546 IPR001841 -
Pte2g02196 559 MobiDBLite consensus disorder prediction 40 69 - -
Pte2g02196 559 MobiDBLite consensus disorder prediction 249 340 - -
Pte2g02196 559 Pfam Ring finger domain 504 547 IPR001841 -
Pte2g02196 559 FunFam E3 ubiquitin-protein ligase arkadia 467 552 - -
Pte2g02196 559 MobiDBLite consensus disorder prediction 181 206 - -
Pte2g02196 559 MobiDBLite consensus disorder prediction 77 101 - -
Pte2g02196 559 ProSiteProfiles Zinc finger RING-type profile. 506 547 IPR001841 -
Pte2g02196 559 MobiDBLite consensus disorder prediction 34 133 - -
Pte2g02196 559 MobiDBLite consensus disorder prediction 270 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02196 Pte-Chr2 41824104 41828699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02196 386 550 C3H Transcription Factor Family AT2G15530 41.212 8.84e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02196 - - qsu:112000105 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02196 2 41824104 41828699 Pte2g02196 2 41824104 41828699 RCT