Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02139 ATGTGCAGGAACACATGCTTGTCGTCTTGCAGTAAGTACTGTACTTTGTTAGGCTTCTCCATTGAAGTTGTTTACATCTTCCATATTGCTGAAGCACAAGACAGACAAGAGTCACAACAACAAAGTCCCCTTCCAGCCCCAAGCACAGGAGTTATCATCTCGGTACTCACAGTTATGTTCTGTGTCACGTTCCTGTTGCTTGTCTATGCAAAATTCTGCCAAAGCAACCCAGCTGCACAGAATCGTGTTCGTCGTAGCCAGACTCTTGGAGTGCTAGTTCGATCGCAGTCTGGACTTTCAGGAATGGACAAGACTATAATTGAATCACTCCCTTTCTTCAAATTCTCTTCAATTAGAGGATCAAAGGAAGGCCTGGAATGCGCTATTTGCATATCGAAATTCGAAGACGATGAGACGCTCAGGATGTTGCCAAAGTGCAAGCATGCATTTCATGTCATATGTATTGATCAGTGGCTTGCAAGTCACTCAAACTGTCCTTTGTGTAGGTACAAGGTTGACTCGGAAGACCTTAAAAGTTTCAGATGCTCCTTCAGTTCAAGGCTTCTGTGGATTCCTTCTAACCTATCGGAGGATCTAAATGTTGATATCTTTGTCCATAGAGAGCAAGAGAATCATCAAGGATCTTCAAGGTTCAACGTGGATGGCAGATTCAGGAACATGCACAAGAGCAAAGAATTAGAGGAAGTTCATAGTGGTAACCTAAGAAATACAAGCTGTGATGACAATAGTAACTGGAAACTATGGCACAAATTCAATCACAGGATAATCGTATCAGGTGTTGTTACGAGGAGCAGGTGGAGTGATTTAAACTATTCAGACTTATTGTCTTTGAAATCAGAGATGTTGATGGATGCATCAAGCAAAAGATTCTCTAATTTGGAATCAATTAACTGTGGAGATTTCCATGCCACTGATGATGACGATGGATTGAACTGGAGGCGGCTATGTGAGTTTAAGTTTAGCCAAACAGATACACATGAAGAAAATTCAGCAAGTGTAATGAACCCTGCAGAGAAGAGGTCCATTTCTGAGATCACAAATGTTTCAAGGTTTATGGGAATATGTATGAAAATCAGGTCAATCAATGATTGTACTGAAAAGAATGTTAAAGAAGAAACATTGAGGAGCATTTGGTTGCCACTAGCAAGGGGAACAATTCAATTGTTTGCAGGACGACAAGGTAGGTTGCAGGACCAAAAATACAAAAGACCAGTTTCATACGTGTGA 1248 0.4111 MCRNTCLSSCSKYCTLLGFSIEVVYIFHIAEAQDRQESQQQSPLPAPSTGVIISVLTVMFCVTFLLLVYAKFCQSNPAAQNRVRRSQTLGVLVRSQSGLSGMDKTIIESLPFFKFSSIRGSKEGLECAICISKFEDDETLRMLPKCKHAFHVICIDQWLASHSNCPLCRYKVDSEDLKSFRCSFSSRLLWIPSNLSEDLNVDIFVHREQENHQGSSRFNVDGRFRNMHKSKELEEVHSGNLRNTSCDDNSNWKLWHKFNHRIIVSGVVTRSRWSDLNYSDLLSLKSEMLMDASSKRFSNLESINCGDFHATDDDDGLNWRRLCEFKFSQTDTHEENSASVMNPAEKRSISEITNVSRFMGICMKIRSINDCTEKNVKEETLRSIWLPLARGTIQLFAGRQGRLQDQKYKRPVSYV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02139 415 CDD RING-H2_EL5-like 126 169 - -
Pte2g02139 415 FunFam RING-H2 finger protein ATL43 102 176 - -
Pte2g02139 415 Pfam Ring finger domain 126 169 IPR001841 -
Pte2g02139 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 178 IPR013083 -
Pte2g02139 415 SMART ring_2 127 168 IPR001841 -
Pte2g02139 415 SUPERFAMILY RING/U-box 106 173 - -
Pte2g02139 415 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Pte2g02139 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02139 Pte-Chr2 41390266 41391521 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02139 42 400 C3H Transcription Factor Family AT2G20030 39.892 1.86e-77 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02139 K10664 - qsa:O6P43_015505 349.362