Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02012 ATGGATAATATCACTCAATCTTCTTCCAGCTTATCTGGGATCAATGCTGTTTCGCCTTTATCGTCTCCTTCTACTCCTTTTGACGACAGTATAGAGGACTCCTGCAGTATTTGCCTTGAGCCTTTCAGCACTGATGAACCCGCCACGATTACCAGTTGCAAGCATCAATACCATCTGCATTGCATTCTTGAATGGGAGCAGAGAAGCAAAGAATGCCCAATATGTTGGCGGTTACTTGTCTTAAGGGACCTAACAAGCCAAGAGCTTTTAGATGAAGTGGACTCTGAAAGATATTCGAGAATGAGGAGGAACATATCTCCTCCCATGTTCACCAATTATAATCACGAATATGATTATTCTGATTCTGACGACTCAGATTTGGAGGAAGTAATTATGAAGCAGTTAATGGTGGACAATGGAGCTTGTTATGTTCCTCAATGTAGAAACAATTCTCCCATTCCAGTGTCATCTTCTGCTGCTGGTGTTAAATTTCCACCTTCCGGCGTCGACAAGGTGGATGCTACAAACGCTGATGGAATGGATGCCCCAATTGGACATAAGGTACTGTATGCCCAGCCTCAATCCCAGACTCCTATCAGAAGACTAAATACTTCTGAGGTGTTCACATTCCCAGAGTCCATTCAATCCAGATTCTCTGCAGCTTCATCGAGGTATAAGGAATCAATTTCTAAAAGCGTTCAAGGCCTGCGAGAGAAGCTACTTGCTCACAACCATTTGGTCAAAGAGTTGCGTAGAGGAGTCCAGCGTGAGATGAATGCAAGCATTGCAGGAGTGGCACGAATAATTGAACGCCTAGATCTTTCCTCAAAAAGAACAGCACCTTCTCCTCCCGTCCCTAGCTTTGACGGTGAAACTTCAAGTACCTCCTTAGAAGGCAAGAGGGTGCAAGAAAATGATATGACTCAGCTTTCTATTAAAGACAGCGCAGATTGTGCTCCTAATTTAAGTTCAACTTCATCACCACCACTTTTCTCTAAAATGGTTTACGGTCCCATACCTGTACGTCCAGCAAATTGGAGGCCAGACATGGAAAGACTGCAAACGAATGGTCGACATTGTACAGTAGCACTTGTCGAAGAAGATGACAACGGAAGTGAGGTATCAGGCAACCAACTTGCTTGCTGTAGGCGTCCAGCGTGGTAG 1164 0.4442 MDNITQSSSSLSGINAVSPLSSPSTPFDDSIEDSCSICLEPFSTDEPATITSCKHQYHLHCILEWEQRSKECPICWRLLVLRDLTSQELLDEVDSERYSRMRRNISPPMFTNYNHEYDYSDSDDSDLEEVIMKQLMVDNGACYVPQCRNNSPIPVSSSAAGVKFPPSGVDKVDATNADGMDAPIGHKVLYAQPQSQTPIRRLNTSEVFTFPESIQSRFSAASSRYKESISKSVQGLREKLLAHNHLVKELRRGVQREMNASIAGVARIIERLDLSSKRTAPSPPVPSFDGETSSTSLEGKRVQENDMTQLSIKDSADCAPNLSSTSSPPLFSKMVYGPIPVRPANWRPDMERLQTNGRHCTVALVEEDDNGSEVSGNQLACCRRPAW* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02012 387 ProSiteProfiles Zinc finger RING-type profile. 35 75 IPR001841 -
Pte2g02012 387 Pfam Ring finger domain 33 75 IPR001841 -
Pte2g02012 387 SUPERFAMILY RING/U-box 32 81 - -
Pte2g02012 387 SMART ring_2 35 75 IPR001841 -
Pte2g02012 387 MobiDBLite consensus disorder prediction 277 299 - -
Pte2g02012 387 MobiDBLite consensus disorder prediction 280 299 - -
Pte2g02012 387 MobiDBLite consensus disorder prediction 1 25 - -
Pte2g02012 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 79 IPR013083 -
Pte2g02012 387 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 24 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g02012 Pte-Chr2 40312713 40315464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02012 33 83 C3H Transcription Factor Family AT4G23450 49.020 5.89e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02012 K19043 - qsa:O6P43_003413 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02012 2 40312713 40315464 Pte2g02012 2 40312713 40315464 RCT