Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g02003 ATGGGAATTTCATGGAGTGGTGGTCGACATAGTAACAACTCCGACCAAAACCATCCGACACCGACGCCCATAGCACAACCTCCTTACTCCTCCTCTGCTACAGAAGGTCATTCTTTTCGTCCTCCACCTCCACCTCCAGCTACTGGAACTCCGTCACCCATAGCACAATCCCCTGAATCCTTCACGTGGATCACTCATCGACCTTTCCTGACAAGTAATATTAATTATGGTCACAGTACTACCTATCCTCCTCCATCACCACCACCTCCTCAAACCCAGTATTCCTCCGTTACCACCTATGCTAATTCTATGATCGGTCGCTCCCATTACCACCCTTATCATATCCATCATGCTAATGGGTGGCCTCCATTTCGTCCTCCTCCCCCACTTGCTCCTGCTCTCCCTGCACCATCTTATGTTGATCATCAAAATGCCAAGAAGGTTAAGAATGAGGTCAACGTCCATAAAGATACGGTCAAGCTCGAAGTTGACACGGTCAATCCTGATCATCAATTGGTTTCTTTCGTTTTCGATGCCTTATGTGACGGCAGTATCACAATCATGTACTTTGCCAAGGAAGAGACACAATGTGAATTTGTTCCTCTGTATCCTGAAGCTTTCAAACCAGTCAAAATCCCCTTTCAAAAGGGCCTTCATCAGAAGTTCATTCAAACTTCTGGATCAGGCATTGATTTGGGCTTCTTTGAGTTGGATGAACTCTCAAAACCAACATCTTCAGAAGACATCTTTCCTCTTGTAATTTGTGCTGAAACAAGCTTGATGTCAAAGTCTGCAGATGAGAGGTTGTGCCAGCCGATGTCAGATGCATCTACTAATCAGCAGATTACTCAAGCCATTATTGAGAAGAAAAACAGTGCTGATCGTTTTGGAGTCAAAGTGATAAAGCAGATTCTATGGATTGATGGGGTTCGTTATGAATTACGGGAGTTATATGGAATAGGAAATTCTGCAACAGAAGATTTTAGTGACAATGATCTGGGAAAGGAGTGTGCAATTTGTATGACGGAACCTAAGGACACAGCTGTCTTACCTTGCAGACATTTGTGTATGTGCAGTGATTGTGCAAAAGCGTTAAGACTTCAATCAAATAATTGTCCCATTTGTCGTCAACCAATTGAAGAATTGATAGAGATCAAGATAACCAGTAGTGATCGTTGA 1179 0.4343 MGISWSGGRHSNNSDQNHPTPTPIAQPPYSSSATEGHSFRPPPPPPATGTPSPIAQSPESFTWITHRPFLTSNINYGHSTTYPPPSPPPPQTQYSSVTTYANSMIGRSHYHPYHIHHANGWPPFRPPPPLAPALPAPSYVDHQNAKKVKNEVNVHKDTVKLEVDTVNPDHQLVSFVFDALCDGSITIMYFAKEETQCEFVPLYPEAFKPVKIPFQKGLHQKFIQTSGSGIDLGFFELDELSKPTSSEDIFPLVICAETSLMSKSADERLCQPMSDASTNQQITQAIIEKKNSADRFGVKVIKQILWIDGVRYELRELYGIGNSATEDFSDNDLGKECAICMTEPKDTAVLPCRHLCMCSDCAKALRLQSNNCPICRQPIEELIEIKITSSDR* 393
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte2g02003 392 MobiDBLite consensus disorder prediction 1 58 - -
Pte2g02003 392 ProSiteProfiles Zinc finger RING-type profile. 337 376 IPR001841 -
Pte2g02003 392 MobiDBLite consensus disorder prediction 1 20 - -
Pte2g02003 392 PANTHER MAHOGUNIN 95 386 IPR045194 GO:0061630
Pte2g02003 392 MobiDBLite consensus disorder prediction 75 95 - -
Pte2g02003 392 SUPERFAMILY RING/U-box 336 382 - -
Pte2g02003 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 386 IPR013083 -
Pte2g02003 392 SMART ring_2 337 375 IPR001841 -
Pte2g02003 392 CDD mRING-HC-C3HC5_MGRN1-like 335 376 IPR045195 -
Pte2g02003 392 Pfam Zinc finger, C3HC4 type (RING finger) 335 381 - -
Pte2g02003 392 MobiDBLite consensus disorder prediction 38 52 - -
Pte2g02003 392 FunFam probable E3 ubiquitin-protein ligase LOG2 321 386 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte2g02003 Pte-Chr2 40251816 40255220 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g02003 106 392 C3H Transcription Factor Family AT3G06140 56.566 4.61e-108 320
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g02003 - - qsa:O6P43_021626 459.529
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g02003 2 40251816 40255220 Pte2g02003 2 40251816 40255220 RCT