Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01975 ATGGCGAGATACCGTAGCCGTAGCAGAAGTTATAGCCCTCGCCGGCGTAGCAGGACCCCACCACGCAGTCGCAAGCATTACGACGATGACCGCCGTAGGGAAAGCAGGTCTTACAGAGACCGACGTTCACCTCTTCCTTCTGGCTTGCTCATTCGCAATCTCCCTCTAGATGCTAGACCGGAAGACCTTAGAGTGCCATTTGAGCGGTATGGTCCTGTGAAGGATGTTTATCTTCCAAAGAATTATTATACCGGTGAGCCTCGTGGGTTTGGATTTGTCAAGTTCCGCTATGGTGAAGATGCAGCTGAAGCTAAGCAAGACCTCAATCACACAATTATAGGTGGCCGAGAAATAAGAATTGTGTTTGCTGAGGAAAACAGGAAAACTCCTCAGGAGATGCAAAAGATCACTCGTGTGAGTGGTAGAAGCTCCAGAAGAAGAACTCCAACAAGATCCTCTAGGTCTCCAAGAAGCCGATATCGCTCTTATTCCCAGTCACTGTCACCAGCTAGACGTGATTCCAGGGATCGCAAGGGTAAGAATGACTATCAATCTCCTGAGAGATCTAGGTCTCTTTCTCGATCTGCTTCTCCACGTGATGAGACTGATGCTGGAAGATCTCCTAGTCCAAGGAAGAAAAGGCATTCTCGTGACAATGGGCGTTCTTGTGACAAGCGGGACCATAGCCCTAGTAGATCACCAACTCCAAGGGGCAATGGACGTAGTCCTGCAGGGTCTAGATCAAGGTCGTACAGCCCTTGCTGA 765 0.4954 MARYRSRSRSYSPRRRSRTPPRSRKHYDDDRRRESRSYRDRRSPLPSGLLIRNLPLDARPEDLRVPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYGEDAAEAKQDLNHTIIGGREIRIVFAEENRKTPQEMQKITRVSGRSSRRRTPTRSSRSPRSRYRSYSQSLSPARRDSRDRKGKNDYQSPERSRSLSRSASPRDETDAGRSPSPRKKRHSRDNGRSCDKRDHSPSRSPTPRGNGRSPAGSRSRSYSPC* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01975 254 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Pte2g01975 254 Gene3D - 2 139 IPR012677 -
Pte2g01975 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Pte2g01975 254 SUPERFAMILY RNA-binding domain, RBD 49 149 IPR035979 GO:0003676
Pte2g01975 254 MobiDBLite consensus disorder prediction 233 254 - -
Pte2g01975 254 MobiDBLite consensus disorder prediction 22 41 - -
Pte2g01975 254 MobiDBLite consensus disorder prediction 1 46 - -
Pte2g01975 254 MobiDBLite consensus disorder prediction 170 209 - -
Pte2g01975 254 MobiDBLite consensus disorder prediction 140 154 - -
Pte2g01975 254 MobiDBLite consensus disorder prediction 1 21 - -
Pte2g01975 254 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
Pte2g01975 254 SMART rrm1_1 48 121 IPR000504 GO:0003723
Pte2g01975 254 MobiDBLite consensus disorder prediction 155 169 - -
Pte2g01975 254 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 233 - -
Pte2g01975 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Pte2g01975 254 MobiDBLite consensus disorder prediction 124 254 - -
Pte2g01975 254 SMART rrm2_1 48 121 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01975 Pte-Chr2 40021846 40025173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01975 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 1.18e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01975 K12900 - zju:107423311 299.286