Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01969 ATGCAAGCAGCTCAACCACCAGTCACCACTGAAGCTTCAGATTCTTCTTCTTCCTCCTCTTCTTCTCAGCTAAACAAAGTAGTTTCAGACATTGGATCCAATGGGCGACGTCCAGACATTTCCCTGCAAATTCCTCCTAGACATCTAGGTTTTGGCAGTAGTCGTGCGGGAAGGAGTTTGGCTCATTCTCGAAGTTTCTCTAAACAAAGTTTGTCACCGGGAGGCTTTTTGCGGGCTTTAAGCTTCAAAAGAAAAATTGCTTTACCAGATGGTGAAAGAAGCAGCCTCCTTAATTCAGAGTCTACAACAACTCTTGATGGTCCAAATATGGAGAATGCTGCAACCTTGTTACCATGGCAAAGATGTGCCTCTCTTCCTGTTACGCCTGGTTCAGATTTGTCACCTTCAATTCCTGCACCAGCTTCTGCAAGGATGTATAGTGAGCAGCCTAAGAAAGAGGTTGCCCGCGCTAAGGTTTCAAGATCCCTTTCTGTGCCTGGAAGGAATGTTGTTATTGTTAGATCCGTCTCATTTTGTAACCATGATAGTCAAGCCCCATCAGAAACTAATGATGATCAAATAACTCCTGTTCCAGTTGAACACGGTGATGAAGAGATTCCCGAAGAGGAAGCAGTCTGCAGGATATGTCTGGATACATGTGAAGAAGGAAACACACTGAAAATGGAGTGCAGTTGCAAAGGTGCCCTCAGACTGCTGCATGAAGATTGTGCAATTAGGTGGTTTACTACAAAAGGAAATAAAAAATGTGATGTGTGTGGACAAGAAGTTCAAAACTTACCTGTAACTTTGCTCCGCATCCCTAGCACTGCCCAAAGGGATAACCAGCAGGACCATGGTCGACAGAATTTGCATGCTGAGGCTGCAAGTGCCTGGCAAGACTTCGTTGTCCTTGTCTTGATAAGCACAATATGCTATTTCTTCTTCCTAGAACAGCTGCTGCTCCCTGATATGAAAACTGAAGCAATCATTGTAGCAGCACCATTTGCTTTCACCTTGGGTCTCCTGTCATCCATCTTTGCTGTGGTCCTTGCAATAAAAGAATATATATGGACATATGCTGCTCTTGAGTTCGCACTTGTGGCTATCATTGTCCACCTGTTCTATACTCTGCTTAGCTTAAAGGCCATATATGCTATAATCATTTCATCCATTCTGGGATTTGGACTATCTATGTTTATCAACTACATATACATCCAGTTTATCTCCTGGCGGTTCCAGGTCCAACATGATTCTCATCCAGTGTGA 1266 0.4376 MQAAQPPVTTEASDSSSSSSSSQLNKVVSDIGSNGRRPDISLQIPPRHLGFGSSRAGRSLAHSRSFSKQSLSPGGFLRALSFKRKIALPDGERSSLLNSESTTTLDGPNMENAATLLPWQRCASLPVTPGSDLSPSIPAPASARMYSEQPKKEVARAKVSRSLSVPGRNVVIVRSVSFCNHDSQAPSETNDDQITPVPVEHGDEEIPEEEAVCRICLDTCEEGNTLKMECSCKGALRLLHEDCAIRWFTTKGNKKCDVCGQEVQNLPVTLLRIPSTAQRDNQQDHGRQNLHAEAASAWQDFVVLVLISTICYFFFLEQLLLPDMKTEAIIVAAPFAFTLGLLSSIFAVVLAIKEYIWTYAALEFALVAIIVHLFYTLLSLKAIYAIIISSILGFGLSMFINYIYIQFISWRFQVQHDSHPV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01969 421 SMART ringv_2 212 260 IPR011016 GO:0008270
Pte2g01969 421 Pfam RING-variant domain 213 259 IPR011016 GO:0008270
Pte2g01969 421 CDD RING_CH-C4HC3_MARCH 213 260 - -
Pte2g01969 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 267 IPR013083 -
Pte2g01969 421 MobiDBLite consensus disorder prediction 1 71 - -
Pte2g01969 421 SUPERFAMILY RING/U-box 209 263 - -
Pte2g01969 421 ProSiteProfiles Zinc finger RING-CH-type profile. 205 266 IPR011016 GO:0008270
Pte2g01969 421 MobiDBLite consensus disorder prediction 1 30 - -
Pte2g01969 421 PANTHER OS02G0165000 PROTEIN 49 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01969 Pte-Chr2 39977330 39981478 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01969 206 316 C3H Transcription Factor Family AT5G05830 33.065 1.30e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01969 - - qsa:O6P43_021681 588.956