Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01953 ATGACTATCATCAAGAGCATAATTCAGGACATGATGTCCAGGTCCCGCAGGGTGGTTCAGGATAATGGTTCGGTAGAGGTGGTTACTGACGGGTTGAAGCAAAGTTGTTGGGCTAACATGCCTCAAGAACTGCTTAGAGAAGTTTTGATGAGAATTGAAACCTCTGAGAGCAGTTGGCCCCCGCGGAAGAGTGTGGTGGCTTGTGCTGGTGTTTGCCGCAGTTGGAGAGAGAGGACCAGAGAGATTGTTAAGACGCCTGAGGTTTCTGCAAAGATTACATTTCCTATCTCTGTGAAGCAGCCTGGTCCAAGGGAACATCTAATGCAGTGCTTCATTAAGCGCAACCGTTCAACCCAGACGTATTATCTCTTCCTAAGTTTGACTAATGCATTAGCTGATGATGGGAAGTTCCTTCTTGCTGCACGAAAGTGCAGACGTCCCACCTGTACAGATTATGTCATCTCTTTAGATGCTGATGATATGTCAAGAGGGAGCAACACCTACATAGGAAAACTGAGGTTCCAGTTAATAAACAATATAACTTCTTTTTGCCATACTTATATGGCAAATGACTTACGTTTTTATCTGTCCTTTCGCAAGATCAAATTTTCTTGGGACCAAGTTCACTGTATACGACATCCAGCCACCTCACTTTGGAGCCAAGATGACCAAAAGCCGGTCTACCAGACTGGTGAACTTGAAACAAGTTTCTCCTAG 717 0.4477 MTIIKSIIQDMMSRSRRVVQDNGSVEVVTDGLKQSCWANMPQELLREVLMRIETSESSWPPRKSVVACAGVCRSWRERTREIVKTPEVSAKITFPISVKQPGPREHLMQCFIKRNRSTQTYYLFLSLTNALADDGKFLLAARKCRRPTCTDYVISLDADDMSRGSNTYIGKLRFQLINNITSFCHTYMANDLRFYLSFRKIKFSWDQVHCIRHPATSLWSQDDQKPVYQTGELETSFS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01953 238 Pfam Tub family 98 177 IPR000007 -
Pte2g01953 238 Pfam F-box domain 37 83 IPR001810 GO:0005515
Pte2g01953 238 CDD F-box_AtTLP-like 37 81 - -
Pte2g01953 238 SUPERFAMILY Tubby C-terminal domain-like 86 178 IPR025659 -
Pte2g01953 238 PANTHER TUBBY-RELATED 24 176 - -
Pte2g01953 238 Gene3D Tubby Protein; Chain A 94 191 IPR025659 -
Pte2g01953 238 SUPERFAMILY F-box domain 30 80 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01953 Pte-Chr2 39791654 39793381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01953 4 178 TUB Transcription Factor Family AT2G47900 61.224 1.77e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte2g01953 Tub 1.8e-26 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01953 K19600 - cave:132168101 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01953 2 39791654 39793381 Pte2g01953 2 39791654 39793381 RCT