Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01945 ATGGCGAGACCTTCAAAGCCACAGGTCTCATCGGACGAAGCTTTATCGAACGGAACCAGTTCGTCTGAAGAGGAGCAAGTGAACGAGCAGATCAACGAGGAAGAAGATGAGGAGGAACTTGAAGCCGTTGCTCGCTCCGCTGGCTCAGATGAAGACGAAGCAGCTGAAGGTAATCAGCAGGATTCCGATGAATTTGCGGCTTCTGCTGGTGACGCCGAGGAGGAAGAGGATGGAGATGGTGCGACCAACGCAGAAATTAGCAAGCGTGAGAAGGCCAGACTGAAAGAATTACAGAAAATGAAGAAAGAAAAGATCCAAGAGTTATTGGATCAACAAAATGCTGCCATTGACGCAGATATGAACAACAGGGGCAAGGGGCGCTTGAAGTATCTTCTACAGCAAACTGAGCTCTTTGCTCATTTTGCTAAAGGGGATCAATCTGCTCCGCAGAAGAAGTCTAGAGGAAGGGGTCGTCATGCATCAAAAATAACTGAAGAGGAAGAAGATGAAGAATATCTCAAAGAGGAGGAAGATGGTTTAGCTGGGACTGGAAACACTAGGCTCGTGACCCAACCATCATGCATTCAGGGGAAGATGAGGGATTACCAACTTGCGGGTTTGAACTGGCTCATTCGATTGTATGAGAATGGAATAAATGGAATCCTTGCAGATGAGATGGGGCTTGGTAAAACATTGCAAACCATCTCCTTGTTAGGATACTTGCATGAGTTCAGAGGTATTACAGGTCCTCATATGGTAGTCGCCCCAAAATCTACGCTTGGAAACTGGATGAATGAAATTCGACGGTTTTGCCCTGTTCTACGTGCAGTGAAGTTTCTCGGGAATCCTGAAGAAAGGAGACATATTAGAGAGGATCTACTGGTTGCTGGGAAATTTGATGTCTGTGTTACTAGTTTTGAAATGGCAATAAAAGAGAAGTCTGCTTTGCGCCGATTTAGCTGGCGCTATATTATAATTGATGAAGCTCATAGAATCAAGAACGAAAACTCTCTCCTCTCAAAAACAATGAGACTTTACAATACAAACTTTCGCCTTCTTATCACTGGTACACCTCTTCAGAATAATCTTCATGAGCTTTGGTCCCTTCTCAATTTTCTTCTTCCCGAGATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGGGACAATGATCAACAGGAAGTTGTCCAACAACTGCACAAGGTGCTTCGTCCCTTTCTTCTTCGAAGGTTAAAGTCAGATGTCGAGAAAGGCTTACCTCCAAAGAAGGAAACAATTCTTAAAGTAGGGATGTCGCAAATGCAAAAACAGTATTACAGGGCCTTATTGCAGAAGGATCTTGAGGTTGTTAATGCTGGTGGAGAACGTAAGCGTCTGCTGAATGTAGCAATGCAGCTACGCAAGTGTTGCAATCATCCATACCTGTTTCAGGGTGCTGAACCTGGCCCTCCCTACACTACTGGAGAGCATCTTATCACTAATGCTGGTAAAATGGTTCTTTTAGATAAGTTGCTCCCAAAACTAAAGGAGCGTGACTCTAGGGTGTTAATATTTTCACAGATGACAAGGCTTCTAGACATACTTGAAGATTATCTGATGTTTTGTGGATATCAGTACTGTCGCATTGATGGCAATACTGGTGGAGAAGATCGTGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGCTATCAACTCGTGCTGGGGGACTGGGTATTAATCTTGCTACTGCAGATATTGTCATTCTGTATGACAGTGACTGGAATCCTCAAGTTGATTTGCAGGCTCAGGACCGAGCTCACAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTTCGTTTTTGCACTGAGTATACAATTGAAGAAAAAGTTATCGAGAGGGCTTATAAAAAACTTGCTCTGGATGCCTTGGTAATACAGCAAGGAAGATTGGCGGAACAGAAGGCTGTAAACAAGGATGAATTGCTTCAAATGGTGAGGTTTGGAGCTGAGATGGTTTTCAGTTCTGGTGATAGTACCATTACAGATGAGGACATTGATAGGATCATTGCTAAAGGAGAAGAGGCCACAGCAGAGCTTGATGCAAAAATGAAGAAATTCACTGAAGATGCAATCAAATTTAAAATGGATGACACTGCTGAGCTGTATGATTTTGATGATGATAAGGATGAGAAGAAATGTGACTTCAAAAAAATTGTCAGTGAAAACTGGATAGAGCCACCCAAAAGAGAGAGAAAACGCAATTACTCAGAGTCTGAGTATTTTAAGCAAACAATGCGGCAAGGTGGTCCGACTAAACCAAAAGAGCCGCGGATTCCTCGGATGCCTCAGCTCCATGACTTTCAGTTTTTCAACACACAAAGACTGAGTGAACTCTATGAAAAAGAAGTGCGCTATCTAATGCAAACACATCAAAAGAATCAGTTAAAAGACAGCATAGATGTTGATGAACCTGAGGAAGTGGGAGATCCATTGACTGCTGAAGAAGTGGAAGAAAAGGAACGTCTGTTAGAAGAGGGTTTTTCTTCATGGAGCCGGAGAGACTTTAATACTTTCATAAGGGCCTGTGAGAAATATGGACGAAATGATGTAAAAGGTATTGCTTCTGAGATGGAAGGGAAAACAGAGGAGGAAGTTGAAAGATATGCCAAAGTTTTCAGAGAAAGATACAAGGAACTAAATGATTATGATAGGATTATTAAAAACATTGAAAGAGGTGAGGCTAGAATTTCGAGGAAGGATGAGATCATGAAGGCTATTGGGAAGAAGTTGGATCGCTATAAGAATCCATGGCTGGAATTAAAGATACAATATGGTCAGAACAAAGGAAAGTTATATAATGAAGAATGTGACCGATTCATGATTTGCATGATTCACAAGCTTGGGTATGGAAATTGGGATGAACTGAAAGCAGCCTTCCGTACATCGCCACTGTTTCGTTTTGATTGGTTCGTGAAGTCTCGCACAACACAGGAACTGGCCAGAAGGTGTGACACCCTCATCCGGTTAATAGAGAAAGAAAACCAAGAGTATGATGAGAGGGAGAGACAGGCCCGCAAAGAGAAGAAACTTGCGAAGAGCATGACTCCGACTAAGCGATCTGTGGGTAAACAGACTGACAGCCCTGCTTCCGTAAAGAAGCGAAAACAGTCAAGCATGGATGACTATGTAGCTTCTGGGAAGAAGAGGAAGTGA 3225 0.4257 MARPSKPQVSSDEALSNGTSSSEEEQVNEQINEEEDEEELEAVARSAGSDEDEAAEGNQQDSDEFAASAGDAEEEEDGDGATNAEISKREKARLKELQKMKKEKIQELLDQQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSAPQKKSRGRGRHASKITEEEEDEEYLKEEEDGLAGTGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPEERRHIREDLLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNFRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNVAMQLRKCCNHPYLFQGAEPGPPYTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGEDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKAVNKDELLQMVRFGAEMVFSSGDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDDKDEKKCDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEEVEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDVKGIASEMEGKTEEEVERYAKVFRERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLIEKENQEYDERERQARKEKKLAKSMTPTKRSVGKQTDSPASVKKRKQSSMDDYVASGKKRK* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01945 1074 MobiDBLite consensus disorder prediction 1022 1038 - -
Pte2g01945 1074 CDD DEXHc_SMARCA1_SMARCA5 196 416 IPR044754 GO:0005524
Pte2g01945 1074 SMART ultradead3 195 387 IPR014001 -
Pte2g01945 1074 Coils Coil 21 41 - -
Pte2g01945 1074 Gene3D - 938 1041 - -
Pte2g01945 1074 Gene3D ISWI, HAND domain 751 849 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pte2g01945 1074 Pfam Helicase conserved C-terminal domain 502 614 IPR001650 -
Pte2g01945 1074 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 850 904 - -
Pte2g01945 1074 FunFam ISWI chromatin-remodeling complex ATPase CHR11 751 849 - -
Pte2g01945 1074 Coils Coil 87 114 - -
Pte2g01945 1074 SUPERFAMILY Homeodomain-like 905 1027 IPR009057 -
Pte2g01945 1074 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 376 IPR014001 -
Pte2g01945 1074 FunFam ISWI chromatin-remodeling complex ATPase CHR11 420 712 - -
Pte2g01945 1074 MobiDBLite consensus disorder prediction 27 41 - -
Pte2g01945 1074 SMART sant 952 1013 IPR001005 -
Pte2g01945 1074 SMART sant 850 899 IPR001005 -
Pte2g01945 1074 MobiDBLite consensus disorder prediction 9 26 - -
Pte2g01945 1074 MobiDBLite consensus disorder prediction 142 185 - -
Pte2g01945 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 697 IPR027417 -
Pte2g01945 1074 SMART helicmild6 530 614 IPR001650 -
Pte2g01945 1074 FunFam ISWI chromatin-remodeling complex ATPase CHR11 938 1041 - -
Pte2g01945 1074 Gene3D - 850 904 - -
Pte2g01945 1074 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 655 IPR001650 -
Pte2g01945 1074 MobiDBLite consensus disorder prediction 1052 1074 - -
Pte2g01945 1074 FunFam Chromatin-remodeling complex ATPase 200 415 - -
Pte2g01945 1074 Gene3D iswi atpase 905 937 - -
Pte2g01945 1074 ProSiteProfiles SANT domain profile. 849 901 IPR017884 -
Pte2g01945 1074 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 186 1062 - -
Pte2g01945 1074 Pfam HAND 763 845 IPR015194 GO:0003677|GO:0006338|GO:0031491
Pte2g01945 1074 MobiDBLite consensus disorder prediction 1 90 - -
Pte2g01945 1074 MobiDBLite consensus disorder prediction 1022 1074 - -
Pte2g01945 1074 Gene3D - 420 712 IPR027417 -
Pte2g01945 1074 CDD SANT 853 894 IPR001005 -
Pte2g01945 1074 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 762 852 IPR036306 GO:0003677|GO:0006338|GO:0031491
Pte2g01945 1074 Coils Coil 1000 1034 - -
Pte2g01945 1074 CDD SF2_C_SNF 500 625 - -
Pte2g01945 1074 Pfam SNF2-related domain 212 479 IPR000330 GO:0005524|GO:0140658
Pte2g01945 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 414 IPR027417 -
Pte2g01945 1074 Pfam SLIDE 907 1017 IPR015195 GO:0003677|GO:0005634|GO:0006338
Pte2g01945 1074 Gene3D - 200 415 IPR038718 -
Pte2g01945 1074 SUPERFAMILY Homeodomain-like 853 903 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01945 Pte-Chr2 39724506 39731595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01945 220 641 RAD5 or RAD16-like Gene Family AT1G02670 27.129 3.08e-42 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte2g01945 SNF2_N 2.5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01945 K11654 - rcu:8262399 1931.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01945 2 39724506 39731595 Pte2g01945 2 39724506 39731595 RCT