Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01940 ATGGAACGGGGCGGTCGGGCCAGTGAGGAGTCGCAGTCCGATCCGTCGCCGGAGTGGACTGGTACGGGAGGAGAAACAGGTTTAGAGGAGCCTATGTGGCGATTGGGATTGGGTGGTGGAGAAGCCTACCCTGAGCGGCCGGACGAGGCTGATTGCTTGCACTATCTCAAGACTGGAAATTGCGGATACGGCTCACGATGTCGCTTCAATCATCCACGTGATAGAGCTGCGGTTATTGGAGCTGGGAGGACTTTTGGCGGGGAGTACCCGGAGCGAGTTGGCCAGCCTATTTGCCAGTACTACATGCGAACTGGAATGTGTAGATTTGGTGCTTCTTGTAAATATCACCACCCTAAGCAAGGAGTAGGAGGAGGAGGAGGGGGAAGCTCTCTTAGCCCTGCCTTTAATTATTACGGATTTCCATTACGACCGGGTGAGAAAGAGTGTTCCTACTATGTGAAAACAGGAGACTGCAAGTTTGGGGCAACATGTAAATTCCACCATCCTCAGCCTGCTGGGATTCAGGTACCTGTAACATTACAAGTTCCTTCTATGCAACAATTGTCTGTGTCTGCAGCAGCGCCTGCCATGTATCAAACTGTACAGACTCCATCTCTTCCTTCATCACAACAGTATGGGCTAATGGTTGCGAGGCCTCCTGTCATACAAGGATCATTTGTCCAAAGCCCCTATGGTTCTCTGGTATTTTCTCCTGCCCCATTTACAGGATGGAGTCCTTATCCGACTCCTGTAAGCCCTGTGGTTCCTCCTGGTTCTCAGTCTAATGTCAATTCCACACCACATTATGGGTTTCCACAGCTGCCTTCTTCGGTACCTGCATATGCTATACCTTATCAAAGCGCACCTTCCCCAGCTGGTCCTTCAAGCAGTAGCCAGAAAGAGAATCCATTTCCCGAGAGACCTGGCCAACCGGAATGTCAATATTACATGAAAACTGGGGATTGTAAATATGGCCCCTCATGTAGATATCACCATCCTCCTGAAATGAGTGCACTGCAGACAAACGTTCTCCTCAGTCCCATGGGTCTTCCTTTGCGCCCGGGTGCAGCGAAATGCACCCATTATGCCCAGCGTGGAGTATGCAAGTATGGTCTAGCATGCAAGTTTGACCACCCCATGGGAACGCTAAGCTACAGTCCATCTGCATCATCCCTTACCGATATGCCAGTTGCACCCTTGTCTGTTGGTTCCTGTATCGGCACTCTTGCCCCGTCATCCTCATCGTCTGAGTTGCGGCCTGATCTTATGTCCGGATCCAGCAATGAATCTGTTCCAGTTAGAATGCCTTCATCTATGAGCACATCTACTGAATCTGTTGGATTATCCCTTTCAGTTGGTGGAACTGTCTCTCACTCAACTGTTCAACCAGCAACTCACGGTTCTAATCCTTAG 1413 0.5025 MERGGRASEESQSDPSPEWTGTGGETGLEEPMWRLGLGGGEAYPERPDEADCLHYLKTGNCGYGSRCRFNHPRDRAAVIGAGRTFGGEYPERVGQPICQYYMRTGMCRFGASCKYHHPKQGVGGGGGGSSLSPAFNYYGFPLRPGEKECSYYVKTGDCKFGATCKFHHPQPAGIQVPVTLQVPSMQQLSVSAAAPAMYQTVQTPSLPSSQQYGLMVARPPVIQGSFVQSPYGSLVFSPAPFTGWSPYPTPVSPVVPPGSQSNVNSTPHYGFPQLPSSVPAYAIPYQSAPSPAGPSSSSQKENPFPERPGQPECQYYMKTGDCKYGPSCRYHHPPEMSALQTNVLLSPMGLPLRPGAAKCTHYAQRGVCKYGLACKFDHPMGTLSYSPSASSLTDMPVAPLSVGSCIGTLAPSSSSSELRPDLMSGSSNESVPVRMPSSMSTSTESVGLSLSVGGTVSHSTVQPATHGSNP* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01940 470 Gene3D - 306 390 - -
Pte2g01940 470 Gene3D - 133 176 - -
Pte2g01940 470 SUPERFAMILY CCCH zinc finger 356 383 IPR036855 GO:0046872
Pte2g01940 470 Gene3D - 41 121 - -
Pte2g01940 470 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Pte2g01940 470 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Pte2g01940 470 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Pte2g01940 470 SMART c3hfinal6 353 380 IPR000571 GO:0046872
Pte2g01940 470 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Pte2g01940 470 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Pte2g01940 470 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Pte2g01940 470 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Pte2g01940 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Pte2g01940 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 309 334 IPR000571 GO:0046872
Pte2g01940 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Pte2g01940 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Pte2g01940 470 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 357 380 IPR000571 GO:0046872
Pte2g01940 470 ProSiteProfiles Zinc finger C3H1-type profile. 353 381 IPR000571 GO:0046872
Pte2g01940 470 SUPERFAMILY CCCH zinc finger 95 119 IPR036855 GO:0046872
Pte2g01940 470 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Pte2g01940 470 PANTHER PROTEIN PHOSPHATASE RELATED 38 400 - -
Pte2g01940 470 SUPERFAMILY CCCH zinc finger 146 171 IPR036855 GO:0046872
Pte2g01940 470 MobiDBLite consensus disorder prediction 289 304 - -
Pte2g01940 470 MobiDBLite consensus disorder prediction 285 310 - -
Pte2g01940 470 MobiDBLite consensus disorder prediction 411 470 - -
Pte2g01940 470 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Pte2g01940 470 MobiDBLite consensus disorder prediction 1 40 - -
Pte2g01940 470 SUPERFAMILY CCCH zinc finger 311 335 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01940 Pte-Chr2 39670489 39675680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01940 1 458 C2H2 Transcription Factor Family AT5G18550 55.319 1.01e-151 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte2g01940 zf-CCCH 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01940 - - qsa:O6P43_003530 651.358