Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01939 ATGTCTACTTCCAGAATGACTGATAGCACAACCTTCAAAGGCCATGAATGTACTCAGATGGAGTTTAATCTTATTCAGCGTAACACTGCATCTGCTAATCCATCTGGTGAGAGAAGAGGTAGACGGAAGCAAGCGGAACCAGGAAGGTTTCTTGGGGTTAGGAGACGACCTTGGGGTCGATATGCTGCTGAAATTAGAGATCCTACTACGAAAGAAAGACATTGGCTGGGAACATTTGACACTGCACAGGAAGCTGCTCTTGCTTATGACAGAGCTGCACTTTCCATGAAAGGCTCTCAAGCAAGAACCAACTTCATTTACACTGATAACACTGACTTCACCACTCTGCTTACTCCAATGGATATTCAAACTCTCTTACCCTCCTCTCATCTCTGCACTTCCATCTGTATCAATACTCAAAGCAAACGAACTCCATGCCAGAACAACCAGTTTCTTTTTTGTGACAACCCCTGTAATATCGGAACACAGATTGGTTCAGAGACTGAAGTGTCAATGAAACCTGATCCAGTTGTCTCCATTGATCAAAATGATGGTTTCTTCTTCTCTACCGATTCTAACTCAGGTTACTTGGAGTGCGTTGTTCCTGATAGCTGTTTCAAACCACCTGCTTCCATTTCCAGTTCCTGCACTCCAAAAAGTGATTTCTATGTTTCCAATGACAAAAACATTGACTCCATTGATACAAATGCCATACATGGTGAATTATCATGTCTTGACAGCTTGTCATTATTCCCTCAAGAAGCAATTAGGGTGTCTACAGTCGCGTCTAATGTAGGAAATTTTCCTTGCCTCGAACAAGGAATTTGGCATAATCAACAATCATGGGACTGTAATTCCGATGAACTTTCAGCCATTATCAACAACAACCCTATGATGGTAATTGAAGAGGGAAGCATGGGAGGTTTTTATCAATATCCAATCATAAACAGCAGTCCAAGTTATGGGCTAATGAGTCAAGCAGCTTCTTCATCGACTTGTTCAACATCATTTACTTCTTTTGGTGATGTAGACATGGGCTACTCACTCTTCTAA 1053 0.4169 MSTSRMTDSTTFKGHECTQMEFNLIQRNTASANPSGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFIYTDNTDFTTLLTPMDIQTLLPSSHLCTSICINTQSKRTPCQNNQFLFCDNPCNIGTQIGSETEVSMKPDPVVSIDQNDGFFFSTDSNSGYLECVVPDSCFKPPASISSSCTPKSDFYVSNDKNIDSIDTNAIHGELSCLDSLSLFPQEAIRVSTVASNVGNFPCLEQGIWHNQQSWDCNSDELSAIINNNPMMVIEEGSMGGFYQYPIINSSPSYGLMSQAASSSTCSTSFTSFGDVDMGYSLF* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01939 350 MobiDBLite consensus disorder prediction 28 51 - -
Pte2g01939 350 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 37 149 - -
Pte2g01939 350 Pfam AP2 domain 52 98 IPR001471 GO:0003700|GO:0006355
Pte2g01939 350 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Pte2g01939 350 FunFam Ethylene-responsive transcription factor 2 49 107 - -
Pte2g01939 350 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Pte2g01939 350 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Pte2g01939 350 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Pte2g01939 350 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Pte2g01939 350 SUPERFAMILY DNA-binding domain 50 106 IPR016177 GO:0003677
Pte2g01939 350 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Pte2g01939 350 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01939 Pte-Chr2 39668099 39669151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01939 1 215 AP2-EREBP Transcription Factor Family AT5G18560 45.420 3.04e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte2g01939 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01939 - - qsa:O6P43_021710 343.199