Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01922 ATGGAACGGGGCGGTCGGGCCAGTGAGGAGTCGCAGTCCGATCCGTCGCCGGAGTGGACTGGTACGGGAGGAGAAACAGGTTTAGAGGAGCCTATGTGGCGATTGGGATTGGGTGGTGGAGAAGCCTACCCTGAGCGGCCGGACGAGGCTGATTGCTTGCACTATCTCAAGACTGGAAATTGCGGATACGGCTCACGATGTCGCTTCAATCATCCACGTGATAGAGCTGCGGTAAATACTTTTGGCGGGGAGTACCCGGAGCGAGTTGGCCAGCCTATTTGCCAGTACTACATGCGAACTGGAATGTGTAGATTTGGTGCTTCTTGTAAATATCACCACCCTAAGCAAGGAGTAGGAGGAGGAGGAGGGGGAAGCTCTCTTAGCCCTGCCTTTAATTATTACGGATTTCCATTACGACCGGGTGAGAAAGAGTGTTCCTACTATGTGAAAACAGGAGACTGCAAGTTTGGGGCAACATGTAAATTCCACCATCCTCAGCCTGCTGGGATTCAGACTCCTGTAAGCCCTGTGGTTCCTCCTGGTTCTCAGTCTAATGTCAATTCCACACCACATTATGGGTTTCCACAGCTGCCTTCTTCGGTACCTGCATATGCTATACCTTATCAAAGCGCACCTTCCCCAGCTGGTCCTTCAAGCAGTAGCCAGAAAGAGAATCCATTTCCCGAGAGACCTGGCCAACCGGAATGTCAATATTACATGAAAACTGGGGATTGTAAATATGGCCCCTCATGTAGATATCACCATCCTCCTGAAATGAGTGCACTGCAGACAAACGTTCTCCTCAGTCCCATGGGTCTTCCTTTGCGCCCGGGTGCAGCGAAATGCACCCATTATGCCCAGCGTGGAGTATGCAAGTATGGTCTAGCATGCAAGTTTGACCACCCCATGGGAACGCTAAGCTACAGTCCATCTGCATCATCCCTTACCGATATGCCAGTTGCACCCTTGTCTGTTGGTTCCTGTATCGGCACTCTTGCCCCGTCATCCTCATCGTCTGAGTTGCGGCCTGATCTTATGTCCGGATCCAGCAATGAATCTGTTCCAGTTAGAATGCCTTCATCTATGAGCACATCTACTGAATCTGTTGGATTATCCCTTTCAGTCGGTGGAACTGTCTCTCACTCAACTGTTCAACCAGCAACTCACGGTTCTAATCCTTAG 1182 0.5076 MERGGRASEESQSDPSPEWTGTGGETGLEEPMWRLGLGGGEAYPERPDEADCLHYLKTGNCGYGSRCRFNHPRDRAAVNTFGGEYPERVGQPICQYYMRTGMCRFGASCKYHHPKQGVGGGGGGSSLSPAFNYYGFPLRPGEKECSYYVKTGDCKFGATCKFHHPQPAGIQTPVSPVVPPGSQSNVNSTPHYGFPQLPSSVPAYAIPYQSAPSPAGPSSSSQKENPFPERPGQPECQYYMKTGDCKYGPSCRYHHPPEMSALQTNVLLSPMGLPLRPGAAKCTHYAQRGVCKYGLACKFDHPMGTLSYSPSASSLTDMPVAPLSVGSCIGTLAPSSSSSELRPDLMSGSSNESVPVRMPSSMSTSTESVGLSLSVGGTVSHSTVQPATHGSNP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01922 393 MobiDBLite consensus disorder prediction 212 227 - -
Pte2g01922 393 PANTHER PROTEIN PHOSPHATASE RELATED 38 332 - -
Pte2g01922 393 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Pte2g01922 393 SUPERFAMILY CCCH zinc finger 91 115 IPR036855 GO:0046872
Pte2g01922 393 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Pte2g01922 393 MobiDBLite consensus disorder prediction 208 233 - -
Pte2g01922 393 SUPERFAMILY CCCH zinc finger 142 167 IPR036855 GO:0046872
Pte2g01922 393 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Pte2g01922 393 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Pte2g01922 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 232 257 IPR000571 GO:0046872
Pte2g01922 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Pte2g01922 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Pte2g01922 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 303 IPR000571 GO:0046872
Pte2g01922 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 115 IPR000571 GO:0046872
Pte2g01922 393 MobiDBLite consensus disorder prediction 334 393 - -
Pte2g01922 393 SUPERFAMILY CCCH zinc finger 279 306 IPR036855 GO:0046872
Pte2g01922 393 Gene3D - 44 117 - -
Pte2g01922 393 SMART c3hfinal6 276 303 IPR000571 GO:0046872
Pte2g01922 393 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Pte2g01922 393 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Pte2g01922 393 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pte2g01922 393 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Pte2g01922 393 MobiDBLite consensus disorder prediction 176 192 - -
Pte2g01922 393 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Pte2g01922 393 SUPERFAMILY CCCH zinc finger 234 258 IPR036855 GO:0046872
Pte2g01922 393 Gene3D - 129 173 - -
Pte2g01922 393 Gene3D - 218 305 - -
Pte2g01922 393 MobiDBLite consensus disorder prediction 171 192 - -
Pte2g01922 393 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pte2g01922 393 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01922 Pte-Chr2 39500962 39505469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01922 1 381 C2H2 Transcription Factor Family AT5G18550 50.766 1.57e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte2g01922 zf-CCCH 1.1e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01922 - - qsa:O6P43_003530 532.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01922 2 39500962 39505469 Pte2g01922 2 39500962 39505469 RCT