Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01908 ATGGCTGACACGAACGCTGGTGCAAGTGTTTCCAATATTGAAGATCAAGGTTTGGAGGAACGAGATATGCTTCTGCCAATGGCGAATGTCTGTCGGATCATGAGGCAAAAACTGCCAGATGATGCTAAAATCGCAAAGGAAGCCAAGGAAGCAATGCAAGAATGTGCGTCTGAGTTCATAAGCTATGTTACAAGCGAGGCAGCACATAAGTGCGAGTTGCAAAGTCGCAAGATTGTGACTGGAGACGACATCATCGGGTCCATGGAAACTTTTGGTTTCGTTGATTATGTCGAGCCACTAAAAAAGTACTTGAGTAGATATCGAAATCAACAGTTAGAAGTAGAAAGAGCAGCTAATCAAGAAAGGCCTACAACAAGTTCTGACCCGAAAGATCAAGCTTGA 402 0.4378 MADTNAGASVSNIEDQGLEERDMLLPMANVCRIMRQKLPDDAKIAKEAKEAMQECASEFISYVTSEAAHKCELQSRKIVTGDDIIGSMETFGFVDYVEPLKKYLSRYRNQQLEVERAANQERPTTSSDPKDQA* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01908 133 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte2g01908 133 SUPERFAMILY Histone-fold 22 127 IPR009072 GO:0046982
Pte2g01908 133 Coils Coil 100 120 - -
Pte2g01908 133 MobiDBLite consensus disorder prediction 113 127 - -
Pte2g01908 133 Gene3D Histone, subunit A 11 133 IPR009072 GO:0046982
Pte2g01908 133 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Pte2g01908 133 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Pte2g01908 133 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Pte2g01908 133 MobiDBLite consensus disorder prediction 113 133 - -
Pte2g01908 133 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 85 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01908 Pte-Chr2 39355031 39355432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01908 18 128 CCAAT-HAP3 Transcription Factor Family AT2G37060 50.450 1.02e-37 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte2g01908 CBFD_NFYB_HMF 5.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01908 K08065 - qsa:O6P43_021722 139.043