Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01872 ATGAGTCTTGCAGAAGATAAAGCTACTTTGCCAAGATGGAATGCAATCTTTGATACTGATGCAAATGAAACTGGAGGTTTTGATTGCAGTATCTGCCTGGGTATCTTGGAAGACCCTGAACCTTACATCTATAAGTGGCTTGATCACTTCCATGGTAGCTCCAGTGAACACCAAGAACGTCAACCACCAAAATGCCCTATCTGTAAAGCAGAGGTTTCTCAGGCTTCATTAGTGCCCCTCTATAGTCGCGGTCAAACAATCAATTCTTCCAAAGACAAGATCATCTGA 288 0.4271 MSLAEDKATLPRWNAIFDTDANETGGFDCSICLGILEDPEPYIYKWLDHFHGSSSEHQERQPPKCPICKAEVSQASLVPLYSRGQTINSSKDKII* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01872 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 94 IPR013083 -
Pte2g01872 95 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 19 90 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte2g01872 95 SUPERFAMILY RING/U-box 26 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01872 Pte-Chr2 38814397 38814714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01872 18 94 C3H Transcription Factor Family AT4G28270 39.130 1.29e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01872 K10666 - cave:132182471 108.612