Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01830 ATGGATGAAGTTGGTGCTGAGTACAAACACTACTGGGAAACAAACATGTTCCTTCAATCTGAAGAGCTTGACAGCTGGATTTTGGATGAAGCGTTATCCAGTCACTTCGATTTGAGCTCGGCGTCTTCCTCTCTAGCATCCAAGAACATAGTCTCAGAGAGGAACAGGAGGATGAAGCTCAATGAGAGACTCTTTGCTCTTAGAGCAGTGGTCCCCAACATCAGCAAGATGGACAAGGCTTCCATAATTAAGGATACCATTGACTACATCCAAGAGTTGCACGAACAAGAAATAAGGATTCAAACTGAGATAATGGAGCTTGAGTCTGGGAAATTGAAGAAAAACCATAGCTATGAGGTTGACCAAGAGCTTCCTGCTTTACTCAATACCAAGAAGAAGAAGAAGAAGAAGAAGACAAAGACTGAGCAATTCTATGATTCTGGGTGCTCTAGAAGCTCACCCCTTGAAGTCCTTGAGTTGGGGGTGACAGGAATGGGAGAGAGGATAGTGGTCGTGAGCTTGACATGCAGCAAAAGGAGAGACACGATGGTGAAACTATGTCAAGTTTTTGAATATTTGAAGCTAAAGATTATCACAGCCAATATCACATCTATTTCAGGGAGGCTTTTGAAGACAGTCTTCGTCGAGGCAGATGAAGTTGAGAAAAATAATCTGCAGATTAGAATCAGAGCAGCCATTGAAGCTCTTAATTATTCTCAAACTCCTAGGAGTGTTTCAAATTTTTAG 747 0.4203 MDEVGAEYKHYWETNMFLQSEELDSWILDEALSSHFDLSSASSSLASKNIVSERNRRMKLNERLFALRAVVPNISKMDKASIIKDTIDYIQELHEQEIRIQTEIMELESGKLKKNHSYEVDQELPALLNTKKKKKKKKTKTEQFYDSGCSRSSPLEVLELGVTGMGERIVVVSLTCSKRRDTMVKLCQVFEYLKLKIITANITSISGRLLKTVFVEADEVEKNNLQIRIRAAIEALNYSQTPRSVSNF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01830 248 Pfam Helix-loop-helix DNA-binding domain 51 93 IPR011598 GO:0046983
Pte2g01830 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 107 IPR036638 GO:0046983
Pte2g01830 248 SMART finulus 50 99 IPR011598 GO:0046983
Pte2g01830 248 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 40 113 - -
Pte2g01830 248 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 43 234 - -
Pte2g01830 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Pte2g01830 248 Gene3D - 39 110 IPR036638 GO:0046983
Pte2g01830 248 ProSiteProfiles ACT domain profile. 171 247 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01830 Pte-Chr2 38403648 38405850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01830 2 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 56.561 1.16e-71 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte2g01830 HLH 3.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01830 - - zju:107421731 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01830 2 38403648 38405850 Pte2g01830 2 38403648 38405850 RCT