Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01648 ATGGATAAAATAGGAAGAGGGTGCAGCTCAGCTCCCATGGAAAGCGAGGAAGAGATCATGAACCTGAGGAGAGGGCCCTGGACTGTTGATGAGGATCTCACCCTCATCAATTTCATTTCTATTCATGGTGAAGGTCGCTGGAATTCTCTTGCTCGTTCTGCTGGGCTGAAAAGAACAGGTAAAAGCTGCAGATTGAGATGGCTCAACTATCTTCATCCTGATGTTCGACGTGGAAACATTACCCTTGAAGAACAGCTCCTGATTCTTGAACTCCATTCTCGTTGGGGCAATAGATGGTCCAAAATAGCCCAGTGCTTGCCTGGAAGAACTGATAACGAAATAAAGAACTATTGGAGAACTCGAGTCCAAAAGCAAGCGAAGCAACTCAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGTTATCTTTGGATGCCAAGACTTGTAGAGCGCATTCAATCGTCAGCGGCGGCGGCCTCTAACTCTACAGTTGCTGCAGCCGATATAATTAGTACTAATCACCATAACTTCAACAATGGCAGTAAAAGAAAAAATGATTTCGACCTTCAAAATGGAAACAACAACATGGTGTTGCCCACGATGGCCATGAGCAACGAGTATGGAGGATCACATGCGACGCAAGGTTTCACACCAGAAAATAGGAGCACAGCTGCATCCTCAGACTCGTTTGGGGCTCACTTAGTTTCTCCTACTTCGGATGTAAGTGATTATTACAGCATTCCAGTTGTGAGTAATATTAGCAGTCAGCAAGATTATTACCAAACCACTAGCCAGGCTAGTCCATATGGATTTTTCAGCCATGGACGAGACTTGCAGATTGTGGAGCAAATTCGACAGGAAGACCCATGGTTTCAGAGTGGGGATACGTCACAGAATTTATGGAATCTTGATGATATGTTCTTTTTACAGCAACAGCTCCATGGCAGTATCTCTGATCAAAAATAA 972 0.4444 MDKIGRGCSSAPMESEEEIMNLRRGPWTVDEDLTLINFISIHGEGRWNSLARSAGLKRTGKSCRLRWLNYLHPDVRRGNITLEEQLLILELHSRWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAKQLKCDVNSKQFKDTMRYLWMPRLVERIQSSAAAASNSTVAAADIISTNHHNFNNGSKRKNDFDLQNGNNNMVLPTMAMSNEYGGSHATQGFTPENRSTAASSDSFGAHLVSPTSDVSDYYSIPVVSNISSQQDYYQTTSQASPYGFFSHGRDLQIVEQIRQEDPWFQSGDTSQNLWNLDDMFFLQQQLHGSISDQK* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01648 323 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Pte2g01648 323 CDD SANT 97 120 IPR001005 -
Pte2g01648 323 Gene3D - 81 144 - -
Pte2g01648 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 126 IPR017930 -
Pte2g01648 323 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
Pte2g01648 323 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Pte2g01648 323 FunFam Myb transcription factor 24 76 - -
Pte2g01648 323 Gene3D - 21 77 - -
Pte2g01648 323 SMART sant 76 124 IPR001005 -
Pte2g01648 323 SMART sant 23 73 IPR001005 -
Pte2g01648 323 CDD SANT 26 71 IPR001005 -
Pte2g01648 323 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pte2g01648 323 SUPERFAMILY Homeodomain-like 20 118 IPR009057 -
Pte2g01648 323 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Pte2g01648 323 FunFam MYB transcription factor 81 144 - -
Pte2g01648 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 75 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01648 Pte-Chr2 35403005 35404944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01648 1 311 MYB Transcription Factor Family AT3G06490 48.358 2.71e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte2g01648 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01648 K09422 - qsa:O6P43_003712 377.481