Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte2g01634 | ATGGCCGAGGGAACTCCTGCCGCTCCTGGTCCACGTTATGCGCCTGATGATCCCACACTTCCAAAACCGTGGAAAGGTTTAATTGACGGAAATTCTGGCATGTTGTATTACTGGAATGTTGACACAAATGTCACCCAGTATGAAAAACCGGCTGGTCCTCCTGCATCAGTTTCTGTGTCGAATATGGCTTCAATTCCAGGGGCTCACTCAGTTCAACACAGTGGTGTGCCAGCTTCCCATGGCCAGCAAATGATGCAAGCCCCACAACAACAAGCACAACAAATAAGCCACCCATCAGATCAGCAAGGACAGGCAGTGACTCAACAACAGAGTGCCCTGGTTGGGCAAGTCACTCATCAGCATGCTTCACAAATAGCTCAAGCTGGACAGTTACAGAACTTTCAGCCTGCCCAGTCTATGCAGCAGCAGGTTCTAAATCAGCAACCTGGGCAGCATCAGGGCCCTCAAGTGCCTCCACAAGTAGGTCATCAATTTTCACAACAGCCTAACCAGCAACTGCCACACCAGCTGAGCCAACAAATGCAACAGTCAAGTCATCAAATGCATCAACATGCTCCACCCCAGCAGGTGCTGCATCAGATGGGCCAGCAACTGCCCTCACAGGCCTTCCTATTGCCGCAATATGGGCAAGGAACACAGCACGGGATGCATATGGGACAACCACAGTCATATCAATTTTCCCATCAGCACATGCAGCACATGTCATATCAGCAAAGTGTTCAACAGGTTCAGCTTAATGCGCAAGGCCAACCATCTGGAAATCAACCTGAATTCAAATCAGCTTTCCCTAAGATGGAGGAGTTGGAGTTTCAGAATGGTAAACGAGTTGGGTTTTCACCAAACAAGTATCAACACAATAGTGCATCATCTGTGAACGATAACCAAAGCGTCACCGTTGGTGTCAATTCATCTATGATGCCGCATCTGAACACTCATTCTGGTCAAGCGCAGCAGTTTTTTGGTTCGTCAGGCTCTACACAACAGTCTCCTCCTTCGGTACAGGACCGACAGTGTGGTTCTGATTTGATTCATCAGCAGGGTCCAAGGTATCAAAATCAGATGAGCCCATCAATGATGCTTGGTCAGCCACCAAAAGTCTCACCTGTTGGTGTAATGGGGTATGAGGACAATATAAATGACAAAGGGGGAAGTGAGTATTTCTATAATTCAAAGAAAGAGGGACCTGTCATGGGTCCTCAGCAACCCAATGTCGGGGCTGTATCTGTTTCTAGAAGCCACCAGGAAATGAGGATGACTACTGCACCTTTTCCAAATGTAATGCCTGGTCATTTCAGTGGTGGTCCTGGACATTCCATGCATAATATGTTCAACCATCCATCAGGGGGTCCCCCTCCATTCCCGAACAACTCCGTGGTCAGGCCACCTTTCATGGGACCATCGTCAGTCAATGACCTATCACCTGCTGAAATTTACTGCCAGCAGCATGAAGTTACAGCAACTGGTGGCAATGTTCCAGCACCATTCCTGACATTCGAGGCTGCTGGTTTCCCTCCAGAGATTCTGAGAGAGATATATTCTGCTGGATTCACAAATCCCACGCCTATTCAAGCTCAAACATGGCCAGTTGCTCTACAAAATAGGGACATAGTGGCAATTGCAAAAACAGGCTCGGGAAAGACATTGGGTTATTTGATGCCTGCATTTATGCTTCTTCGACAGCGTCGTAATAATCCTCAGTGTGGCCCAACTGTCTTGGTTTTGGCTCCAACGCGAGAGCTTGCCACCCAGATCCGAGATGAGGCCATTAAATTTGGTCGATCTTCAAGGGTCTCAATTACGTGCTTGTACGGTGGAGCTCCAAAGGGTCCTCAGTTGAAGGAGTTAGACCGTGGAGCAGAAATTGTTGTTGCGACACCTGGTCGGCTTAATGACATACTTGAAAGCAAGAAGATTGATTTTCGTCAAGTTTCACTTATTGTGCTTGATGAGGCTGATCGGATGCTTGATATGGGTTTTGAACCTCAAATCCGTAAGATTATGAATGAAATACCCCCACGAAGACAGACCCTCATGTATACAGCAACCTGGCCTAAAGAAGTAAGAAAAATTGCTAGTGATCTACTTGTAAATCCTGTCCAGGTCAACATTGGAAACGTGGATGAGCTTGTTGCAAATAAGGCAATTACACAGTATGTTGAGGTGGTCCCTCAAATGGAGAAGCAGAGGCGCTTGGAGCAGATACTTAGATCTCAAGAACGTGGTTCTAAGGTCATAATATTTTGCTCCACCAAGAAACTATGTGATCAGCTTGCTCGTAGCATTGGGCAGAAATTTGGTGCTGCAGCGATTCATGGAGATAAGTCTCAGGGTGAGAGAGATTGGGTTTTAAATCAGTTCAGGAGTGGGAAATCCCCAATTCTAGTTGCAACTGATGTTGCTGCTCGTGGCCTTGATATCAAGGATATAAGGGTTGTGATCAACTATGACTTTCCTACTGGGGTTGAGGATTACGTGCATCGGATTGGACGGACAGGGAGGGCTGGTGCTGTCGGAGTGTCATACACCTTTTTCTCGGAGCAAGACTGGAAACATGCTGCTGATTTAATAAAAGTTTTGGAGGGGGCTAACCAGCTTGTGCCCCCAGAGATACGAGAGATGGCTATGCGCGGCCCTCCTAATTTTGGCAAGGATCGGATGAGCAGATTTGACTCCAGTGGAGCTAGTGGCCCTGGACAATGGGATTCTGGTGGCCGAGGGGGCATGAGGGATGGTGGCTTTGGTGGTCGAGGTGGCATGAGGGATGGTGGATTTGGTGGCCGTGGCAGAATGAGAGATGGTGGGTTTGGTGGCCGTGGTGGAATGAGGGATGGTGGATTTGGCGGTCGTGGTGGCATGCGAGATGGTGGGAGAGGTGGTGATTTCTTTTCTGGGCGAGGAAATAGGGGACGTGGCCTTGGTGGCCCAGGGGGTGGTCACATTGGTTGGGGAAGGAATGATCGTGGTCCATATGATCGCTACAACATGGATGGTCGAGGTCGGGGGCGTGGACCAGGACGGTTTGATAATCGAAGAGATATTTCCCAAAGGAGTAGAGGCAGAAGTTACAGTCGCAGTCCTGAAAGGGTACGGACATGGGGCTACAGTAGAAGTCGCAGCAGGAGCAGTAGTAGGAGCTGGAGCAGGGGGCGGAGTCGCAGCCGCAGTCTGTCTCGTGGTCGCAGTCGAAGTCGAAGTCGAGGCTATAGCCGCAGTGTTTCCCGCAGCCGCAGCCGCAGTCGCAGTCGTGATCGCATTTCATATCGTCGCAGTCGCAGTTATGATAGGAATGATAGGTCAGATGGCCAAAGTGTTGGTCAAAAGGACCCTGCATTCTTGGAGACTGAAGGACCTGAAAGAGGGATGTCTCCAATGTCCCCAGTTGGGCAGGACAGTACCATTTTGGGAATTCAGAACCAGGATCAGTTACAGCCAACAGCTGAGTTTGCCAGGCCTATATGTTCAAATGCGGGGGAAGATCTGGCTCATCAATTTACTGGTGGAAATGAGAGTTAG | 3534 | 0.4909 | MAEGTPAAPGPRYAPDDPTLPKPWKGLIDGNSGMLYYWNVDTNVTQYEKPAGPPASVSVSNMASIPGAHSVQHSGVPASHGQQMMQAPQQQAQQISHPSDQQGQAVTQQQSALVGQVTHQHASQIAQAGQLQNFQPAQSMQQQVLNQQPGQHQGPQVPPQVGHQFSQQPNQQLPHQLSQQMQQSSHQMHQHAPPQQVLHQMGQQLPSQAFLLPQYGQGTQHGMHMGQPQSYQFSHQHMQHMSYQQSVQQVQLNAQGQPSGNQPEFKSAFPKMEELEFQNGKRVGFSPNKYQHNSASSVNDNQSVTVGVNSSMMPHLNTHSGQAQQFFGSSGSTQQSPPSVQDRQCGSDLIHQQGPRYQNQMSPSMMLGQPPKVSPVGVMGYEDNINDKGGSEYFYNSKKEGPVMGPQQPNVGAVSVSRSHQEMRMTTAPFPNVMPGHFSGGPGHSMHNMFNHPSGGPPPFPNNSVVRPPFMGPSSVNDLSPAEIYCQQHEVTATGGNVPAPFLTFEAAGFPPEILREIYSAGFTNPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLMPAFMLLRQRRNNPQCGPTVLVLAPTRELATQIRDEAIKFGRSSRVSITCLYGGAPKGPQLKELDRGAEIVVATPGRLNDILESKKIDFRQVSLIVLDEADRMLDMGFEPQIRKIMNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELVANKAITQYVEVVPQMEKQRRLEQILRSQERGSKVIIFCSTKKLCDQLARSIGQKFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGAVGVSYTFFSEQDWKHAADLIKVLEGANQLVPPEIREMAMRGPPNFGKDRMSRFDSSGASGPGQWDSGGRGGMRDGGFGGRGGMRDGGFGGRGRMRDGGFGGRGGMRDGGFGGRGGMRDGGRGGDFFSGRGNRGRGLGGPGGGHIGWGRNDRGPYDRYNMDGRGRGRGPGRFDNRRDISQRSRGRSYSRSPERVRTWGYSRSRSRSSSRSWSRGRSRSRSLSRGRSRSRSRGYSRSVSRSRSRSRSRDRISYRRSRSYDRNDRSDGQSVGQKDPAFLETEGPERGMSPMSPVGQDSTILGIQNQDQLQPTAEFARPICSNAGEDLAHQFTGGNES* | 1178 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte2g01634 | 1177 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 503 | 531 | IPR014014 | GO:0003724 | |
Pte2g01634 | 1177 | Gene3D | - | 479 | 712 | IPR027417 | - | |
Pte2g01634 | 1177 | Gene3D | - | 713 | 884 | IPR027417 | - | |
Pte2g01634 | 1177 | ProSitePatterns | WW/rsp5/WWP domain signature. | 24 | 50 | IPR001202 | GO:0005515 | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 1083 | 1109 | - | - | |
Pte2g01634 | 1177 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 737 | 881 | IPR001650 | - | |
Pte2g01634 | 1177 | CDD | SF2_C_DEAD | 722 | 851 | - | - | |
Pte2g01634 | 1177 | SMART | ww_5 | 19 | 52 | IPR001202 | GO:0005515 | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 1050 | 1082 | - | - | |
Pte2g01634 | 1177 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 654 | 662 | IPR000629 | - | |
Pte2g01634 | 1177 | Pfam | Helicase conserved C-terminal domain | 734 | 842 | IPR001650 | - | |
Pte2g01634 | 1177 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 575 | 858 | IPR027417 | - | |
Pte2g01634 | 1177 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 18 | 52 | IPR001202 | GO:0005515 | |
Pte2g01634 | 1177 | SUPERFAMILY | WW domain | 12 | 51 | IPR036020 | GO:0005515 | |
Pte2g01634 | 1177 | SMART | ultradead3 | 522 | 725 | IPR014001 | - | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 75 | 108 | - | - | |
Pte2g01634 | 1177 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 534 | 708 | IPR014001 | - | |
Pte2g01634 | 1177 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 476 | 881 | - | - | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 884 | 1138 | - | - | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 1035 | 1049 | - | - | |
Pte2g01634 | 1177 | Pfam | DEAD/DEAH box helicase | 527 | 697 | IPR011545 | GO:0003676|GO:0005524 | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 321 | 346 | - | - | |
Pte2g01634 | 1177 | FunFam | ATP-dependent RNA helicase RhlB | 712 | 884 | - | - | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 992 | 1032 | - | - | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 137 | 196 | - | - | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 67 | 108 | - | - | |
Pte2g01634 | 1177 | SMART | helicmild6 | 762 | 842 | IPR001650 | - | |
Pte2g01634 | 1177 | FunFam | probable ATP-dependent RNA helicase DDX17 | 472 | 711 | - | - | |
Pte2g01634 | 1177 | CDD | WW | 21 | 50 | IPR001202 | GO:0005515 | |
Pte2g01634 | 1177 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Pte2g01634 | 1177 | Gene3D | - | 15 | 63 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte2g01634 | Pte-Chr2 | 35238919 | 35247169 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte2g01634 | 501 | 882 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 34.204 | 7.11e-67 | 229 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte2g01634 | K12823 | - | qsa:O6P43_003723 | 1169.07 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte2g01634 | 2 | 35238919 | 35247169 | Pte2g01634 | 2 | 35238919 | 35247169 | RCT |