Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01621 ATGGATTTTGAGGACTGGGAGTTGAGTGCAGAAGAACTTGATTCTCTTGAAAGGGATGCTTTCAATAAGATTGCTCAACTTCGCAACCAACCCCCTCCTCCTCCTCCTCCTCCTCTTACGGATTCTACTTCTTGCAGTTTTCAACAAAAACAAGATGGGCATTCTAAAGCATCCTCTGGGAACCAGAAGCACAACCAAAGTTCGCATTCCCCAGATAAGAAAACCGTTGCGGATTCCCCTGCTTACAAAGTTGACGGCTTGTCTATAGGATCCAGGTCATTGCCGAACTCTATAGCATCAGTTGCAAACAAAGGTGAAGATGGAGCAGGGAGAGAGATTCCGCAGCTCTCAGTCAAATTGTTTCTTCACTCCAGCGGAAGTATTGCTGCCAAATTTCCATATGATCAGGTTGTAGTAGCTGCTGTTCGCAATATCCCCAAAGCAACCTGGAATGCAAAAGAAAGGTTGTGGATGTTCCCAGTGGCTTCTTTGCCCGCTGCAGAAAAGATATTTAGTCAAATATCTAGTCATAATGTTCAGATGGAGAATCTGGATCCTTTAGTCCATCGTGCTGTTAAAGCTGCATCAGCTGTTCCTGATCTTCGAGATCGATATGACAGGATACCTAGCCATATTGAGTCAAAGCTTTTGCCATTTCAGAGAGATGGAATTAGGTTTATATTGCAGCATGGTGGGCGTGCTCTCTTAGCTGATGAGATGGGGCTGGGGAAAACGTTACAGGCCATTGCCGTTGCAGCCTGTGTTCGTGATTCATGGCCTGTGCTTATACTCAGTCCATCTTCATTACGTTTGCATTGGGCTTCTATGATCCAACAATGGCTATGCATTCCTCCTTCTGATATACTTGTTGTTTTATCTCAATGTGGTGGATCTAATAGAGGTGGGTTCAATATTGTGCCATCGAGTGCCAAGAGCTTGATTAATCTTGATGGCCTATTCAACATAATTTCATATGATGTTGTCCCGAAGTTGCAGAATAAACTCATGGCATCCGAGTTTAAGGTGGTTATTGCAGATGAATCGCATTTTCTGAAAAATGCTCAAGCAAAGAGGACAACATCATCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTGAGTGGTACTCCTGCTCTATCCAGGCCAATCGAACTGTTCAAGCAGCTGGAAGCTTTATATCCTGATGCTTACAAGAATGTTCATGAATATGGTAACCGGTATTGTAAGGGTGGAATTTTCGGAAATTATCAAGGTGCAAGTAATCATGAAGAATTGCATAATCTGATGAAGGCAACTGTAATGATTCGCAGGCTCAAAAAGGACGTTCTTTCTGAGCTCCCTACGAAGCGTAGGCAACAAGTCTTCCTAGATTTATCTGACAAGGACATGAAACAAATCAATGCACTATTCCGAGAGTTAGAGGTGTTAAAAGCCAAAATAAAAGCTTGCCAGTCAAAGGAAGAAGTTGAATCTCTCAAGTTTTCTCAGAAGAATCTTATCAACAAGATATATACGGATTCAGCTGAAGCGAAGATTCCAGCCGTCCTTGACTACCTAGCTACAGTTATTGAGGCAGGCTGCAAGTTTCTTATATTTGCATACCATCAACCAATGTTAGATGCAATACACGACTTTCTTCTCAAGAAAAAGGTAGGTTGCATAAGAATTGATGGCAACACCCCCCCTGCACTAAGGCAACCTTTGGTTACAGATTTCCAGGAAAAGGATAATATTAAGGCGGCAGTGCTGTCCATCAAAGCCGGAGGAGTTGGTTTAACTTTGACTGCTGCAAGCACAGTCATTTTTGCTGAGCTTTCCTGGACACCTGGCGATCTTTGTCAAGCTGAGGATCGCGCTCATAGAATTGGACAGGTAATAAGACATACTCGAATATTCAGTTTGATTTCTACCTGA 1920 0.4266 MDFEDWELSAEELDSLERDAFNKIAQLRNQPPPPPPPPLTDSTSCSFQQKQDGHSKASSGNQKHNQSSHSPDKKTVADSPAYKVDGLSIGSRSLPNSIASVANKGEDGAGREIPQLSVKLFLHSSGSIAAKFPYDQVVVAAVRNIPKATWNAKERLWMFPVASLPAAEKIFSQISSHNVQMENLDPLVHRAVKAASAVPDLRDRYDRIPSHIESKLLPFQRDGIRFILQHGGRALLADEMGLGKTLQAIAVAACVRDSWPVLILSPSSLRLHWASMIQQWLCIPPSDILVVLSQCGGSNRGGFNIVPSSAKSLINLDGLFNIISYDVVPKLQNKLMASEFKVVIADESHFLKNAQAKRTTSSLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDAYKNVHEYGNRYCKGGIFGNYQGASNHEELHNLMKATVMIRRLKKDVLSELPTKRRQQVFLDLSDKDMKQINALFRELEVLKAKIKACQSKEEVESLKFSQKNLINKIYTDSAEAKIPAVLDYLATVIEAGCKFLIFAYHQPMLDAIHDFLLKKKVGCIRIDGNTPPALRQPLVTDFQEKDNIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLCQAEDRAHRIGQVIRHTRIFSLIST* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01621 639 ProSiteProfiles HARP domain profile. 112 186 IPR010003 -
Pte2g01621 639 MobiDBLite consensus disorder prediction 42 66 - -
Pte2g01621 639 CDD DEXHc_HARP_SMARCAL1 216 439 - -
Pte2g01621 639 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 225 397 IPR014001 -
Pte2g01621 639 SMART helicmild6 542 625 IPR001650 -
Pte2g01621 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 449 IPR027417 -
Pte2g01621 639 SMART ultradead3 212 405 IPR014001 -
Pte2g01621 639 Pfam Helicase conserved C-terminal domain 518 625 IPR001650 -
Pte2g01621 639 Gene3D - 479 639 IPR027417 -
Pte2g01621 639 MobiDBLite consensus disorder prediction 19 78 - -
Pte2g01621 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 627 IPR027417 -
Pte2g01621 639 Pfam SNF2-related domain 234 488 IPR000330 GO:0005524|GO:0140658
Pte2g01621 639 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 5 634 - -
Pte2g01621 639 FunFam Chromatin remodeling factor18 189 463 - -
Pte2g01621 639 Gene3D - 188 463 IPR038718 -
Pte2g01621 639 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 639 IPR001650 -
Pte2g01621 639 Coils Coil 468 488 - -
Pte2g01621 639 CDD SF2_C_SNF 512 637 - -
Pte2g01621 639 Coils Coil 10 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01621 Pte-Chr2 34922425 34931187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01621 496 626 RAD5 or RAD16-like Gene Family AT1G05120 33.333 9.95e-15 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte2g01621 SNF2_N 1.4e-27 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01621 K14440 - cave:132176025 957.592