Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01616 ATGGATGTCAACAGCAGACAGAAAGTTATTGGCAAGGCAGTGAAGCCTCATGCAGTTGTAGCAAAAGATGGGACGGTTGTTGGACCTGGATTTCTTTGCAAGGCAATGGGGTTTAAAAACACAGCAGGGCCTCAGGGACACCAGGCTGTGGCACTTCGTGTCCAATCAGATAGGTCTGCCTTCTTCAATTGCAGAATGGATGGATACCAGGACACATTGTACATACAAACCCATAGACAATTCTACCGCAACTGTGCCATCTCAGGCACAGTTGATTTCAACTTTGGAGACGGTTCAGTCATCATCCAATATCGTTCCTGA 321 0.4673 MDVNSRQKVIGKAVKPHAVVAKDGTVVGPGFLCKAMGFKNTAGPQGHQAVALRVQSDRSAFFNCRMDGYQDTLYIQTHRQFYRNCAISGTVDFNFGDGSVIIQYRS* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01616 106 Gene3D - 5 104 IPR012334 -
Pte2g01616 106 SUPERFAMILY Pectin lyase-like 25 104 IPR011050 -
Pte2g01616 106 Pfam Pectinesterase 25 103 IPR000070 GO:0030599|GO:0042545
Pte2g01616 106 PANTHER PECTINESTERASE 25 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01616 Pte-Chr2 34799837 34800514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01616 4 103 Carbohydrate Esterase AT2G26450 57.143 1.36e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01616 K01051 - csv:101220071 146.362