Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01611 ATGGAATTAGGTTTATATTGCAGCATGGTGGGGCGTGCTCTCTTAGCTGATGAGATGGGGCTGGGGAAAACGTTACAGGCCATTGCCGTTGCAGCTTGTGTTCGTGATTCATGGCCTGTGCTTATACTCAGTCCATCTTCATTACGTTTGCATTGGGCTTCTATGATCCAACAATGGCTATGCATTCCTCCTTCTGATATACTTGTTGTTTTATCTCAATGTGGTGGATCTAATAGAGGTGGGTTCAATATTGTGCCATCGAGTGCCAAGAGCTTGATTAATCTTGATGGCCTATTCAACATAATTTCATATGATGTTGTCCCGAAGTTGCAGAATAAACTCATGGCATCCGAGTTTAAGGTGGTTATTGCAGATGAATCGCATTTTCTGAAAAATGCTCAAGCAAAGAGGACAACATCATCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTGAGTGGTACTCCTGCTCTATCCAGGCCAATCGAACTGTTCAAGCAGCTGGAAGCTTTATATCCTGATGCTTACAAGAATGTTCATGAATATGGTAACCGGTATTGTAAGGGTGGAATTTTCGGAAATTATCAAGGTGCAAGTAATCATGAAGAATTGCATAATCTGATGAAGGCAACTGTAATGATTCGCAGGCTCAAAAAGGACGTTCTTTCTGAGCTCCCTACGAAGCGTAGGCAACAAGTCTTCCTAGATTTATCTGACAAGGACATGAAACAAATCAATGCACTATTCCGAGAGTTAGAGGTGTTAAAAGCCAAAATAAAAGCTTGCCAGTCAAAGGAAGAAGTTGAATCTCTCAAGTTTTCTCAGAAGAATCTTATCAACAAGATATATACGGATTCAGCTGAAGCGAAGATTCCAGCAGTCCTTGACTACCTAGCTACAGTTATTGAGGCAGGCTGCAAGTTTCTTATATTTGCATACCATCAACCAATGTTAGATGCAATACACGACTTTCTTCTTAAGAAAAAGGTAGGTTGCATAAGAATTGATGGCAACACCCCCCCTGCACTAAGGCAACCTTTGGTTACAGATTTCCAGGAAAAGGATAATATTAAGGCGGCAGTGCTGTCCATCAAAGCCGGAGGAGTTGGTTTAACTTTGACTGCTGCAAGCACAGTCATTTTTGCTGAGCTTTCCTGGACACCTGGCGATCTTTGTCAAGCTGAGGATCGCGCTCATAGAATTGGACAGGTGTCGTCAGTGAACATATACTATTTGTTAGCAAATGACACTGTTGATGACATCATATGGGATGTGGTCCAGGGCAAACTAGAAAATCTGGGACAGGTGCTTGATGGCCATGAGAATACTATGGAAGTTTCAGCAAGTCAGCCTAAAAGTAGCCCTGCAAAGCAGAAAACACTTGACTCCTTCATGAAACGATGTGGTGGTGTGGGTGAACTTGAACACCAACTCAACCCAAAATGCCCCCGTCACTGA 1464 0.4235 MELGLYCSMVGRALLADEMGLGKTLQAIAVAACVRDSWPVLILSPSSLRLHWASMIQQWLCIPPSDILVVLSQCGGSNRGGFNIVPSSAKSLINLDGLFNIISYDVVPKLQNKLMASEFKVVIADESHFLKNAQAKRTTSSLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDAYKNVHEYGNRYCKGGIFGNYQGASNHEELHNLMKATVMIRRLKKDVLSELPTKRRQQVFLDLSDKDMKQINALFRELEVLKAKIKACQSKEEVESLKFSQKNLINKIYTDSAEAKIPAVLDYLATVIEAGCKFLIFAYHQPMLDAIHDFLLKKKVGCIRIDGNTPPALRQPLVTDFQEKDNIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLCQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQGKLENLGQVLDGHENTMEVSASQPKSSPAKQKTLDSFMKRCGGVGELEHQLNPKCPRH* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01611 487 SMART helicmild6 321 404 IPR001650 -
Pte2g01611 487 Gene3D - 257 475 IPR027417 -
Pte2g01611 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 447 IPR027417 -
Pte2g01611 487 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 11 472 - -
Pte2g01611 487 Pfam SNF2-related domain 13 267 IPR000330 GO:0005524|GO:0140658
Pte2g01611 487 CDD DEXHc_HARP_SMARCAL1 11 218 - -
Pte2g01611 487 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 296 447 IPR001650 -
Pte2g01611 487 FunFam Chromatin remodeling factor18 253 481 - -
Pte2g01611 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 228 IPR027417 -
Pte2g01611 487 Coils Coil 247 267 - -
Pte2g01611 487 Pfam Helicase conserved C-terminal domain 297 404 IPR001650 -
Pte2g01611 487 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 4 176 IPR014001 -
Pte2g01611 487 Gene3D - 3 243 IPR038718 -
Pte2g01611 487 FunFam Chromatin remodeling factor18 4 242 - -
Pte2g01611 487 SMART ultradead3 5 184 IPR014001 -
Pte2g01611 487 CDD SF2_C_SNF 291 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01611 Pte-Chr2 34618535 34627571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01611 185 431 RAD5 or RAD16-like Gene Family AT1G61140 26.667 1.09e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte2g01611 SNF2_N 8.7e-28 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01611 K14440 - cave:132176025 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01611 2 34618535 34627571 Pte2g01611 2 34618535 34627571 RCT