Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01560 ATGTCGTTGAAACCAAGTGCCAGGACGGAGGTTCGACGGAACCGATACAAGGTCGCCGTAGATGCGGACGAGGGTCGCAGGCGGCGAGAGGACAATATGGTCGAGATCCGCAAGAATAAACGTGAAGAGAGCTTGCTGAAGAAGCGTCGTGAAGGGCTTCAAGCTCAGCAGCAGTTTGCTGCTCATCTGCAGACTTCTACTGTTGAGAAAAAGTTGGAGAGTCTTCCTTCAATGGTTGCGGGTGTATTTTGTGACAATAATAATCTGCAACTGGAAGCGACTACACAGTTTCGTAAATTGCTTTCAATTGAGCGTAGCCCTCCTATCGAGGAAGTCATTCAATCCGGGGTCGTTCCAAAATTTGTTGAGTTTCTTATGAGGGAAGATTTTCCTCAGCTTCAGTTTGAGGCCGCTTGGGCTCTGACAAATATAGCATCGGGGACCTCTGAGAACACCAAGGTCGTGATTGATCATGGAGCAGTACCTATTTTTGTGAAGCTACTTAGTTCTCCTAGTGATGATGTTCGAGAGCAGGCTGTATGGGCCTTGGGAAATGTTGCTGGTGACTCGCCTAGGTGTCGCGATCTTGTACTCAGCCATGGAGCATTGATTCCTTTGCTGGCTCAATTGAATGAACATGCTAAGCTTTCAATGCTAAGAAATGCAACATGGACCCTATCAAATTTCTGCAGGGGCAAGCCACAGCCTGCATTTGAGCAGGTGAGACCAGCTCTGCCAGCTCTTGAGCGTCTAGTTCACTCAAATGACGAGGAAGTTCTGACGGATGCTTGTTGGGCACTTTCATACCTTTCTGATGGTACCAATGACAAAATCCAAGCTGTTATTGACGTCGGAGTATGCCCGAGATTGGTCCAGCTTCTCATGCACCCATCTCCTGCTGTACTCATACCTGCTCTCCGCACAGTGGGAAACATTGTGACTGGGGATGATATGCAAACTCAGTGTATAATCAATCATGCTGCACTCCCATGCCTTTCGAGCCTCCTGACACATAATCACAAGAAGAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACAGCAGGCAACACAGATCAGATACAGCAATTTTATGTGCCAATTGTGAAATAA 1119 0.4701 MSLKPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREESLLKKRREGLQAQQQFAAHLQTSTVEKKLESLPSMVAGVFCDNNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPKFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPAFEQVRPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIDVGVCPRLVQLLMHPSPAVLIPALRTVGNIVTGDDMQTQCIINHAALPCLSSLLTHNHKKSIKKEACWTISNITAGNTDQIQQFYVPIVK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01560 372 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Pte2g01560 372 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Pte2g01560 372 Gene3D - 11 50 IPR036975 GO:0006606
Pte2g01560 372 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Pte2g01560 372 SUPERFAMILY ARM repeat 13 367 IPR016024 -
Pte2g01560 372 Gene3D - 73 369 IPR011989 -
Pte2g01560 372 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Pte2g01560 372 PANTHER IMPORTIN ALPHA 12 366 - -
Pte2g01560 372 SMART arm_5 148 188 IPR000225 GO:0005515
Pte2g01560 372 SMART arm_5 233 272 IPR000225 GO:0005515
Pte2g01560 372 SMART arm_5 274 314 IPR000225 GO:0005515
Pte2g01560 372 SMART arm_5 316 357 IPR000225 GO:0005515
Pte2g01560 372 SMART arm_5 105 146 IPR000225 GO:0005515
Pte2g01560 372 SMART arm_5 189 231 IPR000225 GO:0005515
Pte2g01560 372 FunFam Importin subunit alpha 11 50 - -
Pte2g01560 372 Pfam Armadillo/beta-catenin-like repeat 317 357 IPR000225 GO:0005515
Pte2g01560 372 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Pte2g01560 372 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Pte2g01560 372 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Pte2g01560 372 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Pte2g01560 372 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Pte2g01560 372 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01560 Pte-Chr2 30555195 30558223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01560 131 306 U-box Gene Family AT3G46510 28.409 1.26e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01560 K15042 - gmx:100792804 658.677