Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01554 ATGGACGGAGGAGGCCAGTACAGCCCTCGCACCGTCGAGGAGGTTTTTAGAGATTTTAAGGGTCGTCGAGCAGCCATGATCAAAGCTCTCACCATCGATGTCGAAGATTTTTTTCAACAGTGCGATCCTGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAATGAGCAATGGGAAGTGAACTTACCTGCCGAAGAAGTTCCTCCAGAGCTTCCCGAGCCTGCACTAGGCATAAACTTTGCTAGAGATGGGATGCAAGAACGAGATTGGCTATCTCTTGTTGCTGTGCACAGTGATGCCTGGTTGCTTGCTGTGGCTTTCTATTTTGGGGCACGATTTGGGTTTGATAAGGCTGACAGGAAACGCCTCTTCACTATGATTAATGATCTTCCTTCAATATTTGAGATTGTGACTGGATCCTCAAAGAAACAGTCAAAGGAAAAGTCATCAGTTTCAAACAACACCAGCAATAAAGTGAAATCTGGTTCAAAAGGACGAGGATCTGACTCTGGAAAACATTCCAAGAGCTTACAAGCGAAAGATGGAGAGGAGGGATTAGATGAAGAAGATGATGAAGATCATGGAGAGACCGTTTGCGGAGCATGTGGGGAGCACTATGCTGCCGATGAATTCTGGATTTGTTGCGACTTATGTGAAAAATGGTTTCACGGGAAGTGTGTGAAGATTACACCTGCTAGGGCCGAGCACATAAAACAATACAAGTGTCCCTCGTGCAGCAACAAGAGAGCTCGGCCTTGA 759 0.4572 MDGGGQYSPRTVEEVFRDFKGRRAAMIKALTIDVEDFFQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQERDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPSIFEIVTGSSKKQSKEKSSVSNNTSNKVKSGSKGRGSDSGKHSKSLQAKDGEEGLDEEDDEDHGETVCGACGEHYAADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01554 252 MobiDBLite consensus disorder prediction 144 164 - -
Pte2g01554 252 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Pte2g01554 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Pte2g01554 252 SMART PHD_3 198 246 IPR001965 -
Pte2g01554 252 FunFam PHD finger alfin-like protein 191 247 - -
Pte2g01554 252 MobiDBLite consensus disorder prediction 165 182 - -
Pte2g01554 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Pte2g01554 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Pte2g01554 252 Pfam PHD-finger 198 248 IPR019787 -
Pte2g01554 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Pte2g01554 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Pte2g01554 252 MobiDBLite consensus disorder prediction 144 193 - -
Pte2g01554 252 CDD PHD_AL_plant 199 248 IPR044104 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01554 Pte-Chr2 29918174 29920554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01554 1 253 Alfin-like Transcription Factor Family AT3G42790 74.016 1.65e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte2g01554 Alfin 7.7e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01554 K26274 - cpap:110817645 440.654