Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01549 ATGAGCGGAGTATCAAATTCCTGGGATACAATACTTTCGCCTCCTCCTCCTCCACCTCCCTCTTCATCGAAGTCGAACATGCCCATGTTGTATTACGGTCTTGTGGTCGTGGGAACAGCTGCTATAGTATTGGTCATATACAACCTTATAGTCGTCAGATGGTGCACAAGACAACATCTGCAGTCACAGTCTGGAAGGGTAAATCGATTTGGTGTTGGCATGACAAGGGGTCAAGGTTTGGGGAACTCAAATAGGAACTTGTTGTCAAGCTTCAGGTACAAAAAAGAAGCTAGGGTAGAAACACAAGAACAACAAGACAGTGTTGAATATGAATGCTCGGTTTGCTTGTCAGTTTTTGAAGAAGGTGAGGAGGTGAGGATACTGCCAAGGTGCAAGCACTCTTTTCATGCAGTTTGTATAGATATGTGGCTGTACTCTCACTTCGATTGCCCGCTTTGTCGTGCACCAGTTAGACCCTTGTGTCAACGGCTTCAGGTTAGAGAAAACACCGCGGAGAGCTCACAGGTAGGTTTAATGGAGCCTGTCAATACAGTCTGA 558 0.4588 MSGVSNSWDTILSPPPPPPPSSSKSNMPMLYYGLVVVGTAAIVLVIYNLIVVRWCTRQHLQSQSGRVNRFGVGMTRGQGLGNSNRNLLSSFRYKKEARVETQEQQDSVEYECSVCLSVFEEGEEVRILPRCKHSFHAVCIDMWLYSHFDCPLCRAPVRPLCQRLQVRENTAESSQVGLMEPVNTV* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01549 185 SUPERFAMILY RING/U-box 91 160 - -
Pte2g01549 185 ProSiteProfiles Zinc finger RING-type profile. 112 154 IPR001841 -
Pte2g01549 185 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 22 157 IPR044675 -
Pte2g01549 185 Pfam Ring finger domain 111 154 IPR001841 -
Pte2g01549 185 FunFam RING-H2 finger protein ATL1 68 159 - -
Pte2g01549 185 CDD RING-H2_EL5-like 111 154 - -
Pte2g01549 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 160 IPR013083 -
Pte2g01549 185 MobiDBLite consensus disorder prediction 1 23 - -
Pte2g01549 185 SMART ring_2 112 153 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01549 Pte-Chr2 29632738 29633825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01549 34 157 C3H Transcription Factor Family AT5G17600 39.259 3.75e-24 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01549 - - pvy:116146877 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01549 2 29632738 29633825 Pte2g01549 2 29632738 29633825 RCT