Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01540 ATGAACTCAAGAAACAGGTTTCCCTTCACTGCATCTCAGTGGCAAGAGCTTGAACAACAAGCTCTCATCTACAAGTACATGGCTTCAGGAATCCCTATTCCTCCTGATCTCCTCTTCTCTGTGAGAAGAAGCTATCTGGACTCCCCTCTGTCTGCAAGGCTCTTGTCCCATCAACCACAACATGTTGGATGGAACTACTTGCAAATGAGCTTAGGCAGAAAAATAGACCCAGAACCAGGAAGGTGCAGAAGGACAGATGGCAAGAAATGGAGGTGTTCTAAAGAGGCCTTCCCAGATTCGAAGTACTGTGAGAGACACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGCTTTGAAAGCAACACTTACGAACACCAACTCTTCCACACCTCAAATCGCCAAGTACCACCCCTCTGCTGCACTCACCCCGGCTACGCATTCTGCCTCTGCATTCTCACCGTCAGTCTCTTCCGACCACCGACCACAGCAACGTTCGCTTCACCATCCCTTTCTATATCATACTACCGATAACAACAGTAGCAGTAATGCTTCCTCAAGACCATTGTCTTTTCAAGACAACAGTGCTCCTTTGTTTCTTGATAGCGGTGCGTCCTATTCACAAAGCAATGTAGACTACAGGTTTGCCCCTAAGACATTGACTGATATTAAAGTCTGGCTTTGGTCTATCTTCTTCATCTCTGTTATTGAAAATCATATTTTTTCTTCTTGGGAAACAAAAAGAAACAGATATGTCTATGGCCTGAAGGAAGAAGTGGATGAGCATGCTTTCTTTTCTGAGCCTTCTGGGACTGTGAAAAGTCTATCAACTTCATCTATGGATGATTCCTGGCAACTGACTCCATTGACAATGAGCTCTTCATCATCTTCAAAACAAAGGAGCTGTTCTGGTAATCTCCAGGAATATGCATATTTGCAGCTTCAGAGTCTTAATGATAGTACTAAACAGCAAGACCAAGACCAACGCAGTTGCTATGGTTTGAATGGAGATATCAAACGTGACATTCCCATGAAGTTGGGGAATGATGAGCCACAGAAGACCATGCATCATTTCTTGGATGAATGGCCCCACAAAGGCAGAGATTCGTGGCTTGATTTGGACGATAAAACATCAAATGCTTCCTCAGTTTCGACAACCCGTCTCTCGATTTCAATTCCAACTTCTCACCGTGATTTCCAAACCAACTAA 1215 0.4428 MNSRNRFPFTASQWQELEQQALIYKYMASGIPIPPDLLFSVRRSYLDSPLSARLLSHQPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVEALKATLTNTNSSTPQIAKYHPSAALTPATHSASAFSPSVSSDHRPQQRSLHHPFLYHTTDNNSSSNASSRPLSFQDNSAPLFLDSGASYSQSNVDYRFAPKTLTDIKVWLWSIFFISVIENHIFSSWETKRNRYVYGLKEEVDEHAFFSEPSGTVKSLSTSSMDDSWQLTPLTMSSSSSSKQRSCSGNLQEYAYLQLQSLNDSTKQQDQDQRSCYGLNGDIKRDIPMKLGNDEPQKTMHHFLDEWPHKGRDSWLDLDDKTSNASSVSTTRLSISIPTSHRDFQTN* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01540 404 Pfam QLQ 8 41 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte2g01540 404 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte2g01540 404 PANTHER GROWTH-REGULATING FACTOR 5 8 398 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pte2g01540 404 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte2g01540 404 Pfam WRC 77 119 IPR014977 -
Pte2g01540 404 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01540 Pte-Chr2 29526006 29527350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01540 6 119 GRF Transcription Factor Family AT3G13960 69.298 3.99e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pte2g01540 WRC 4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01540 - - qsa:O6P43_022479 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g01540 2 29526006 29527350 Pte2g01540 2 29526006 29527350 RCT