Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01483 GAGCCTCCTCCTTTCCAAGAAGCAGCACGCTGCGATGTCTGCAATTGCAGTTTCAGTACTTTCAAGAGGCGGCACCACTGTCGTAGTTGCGGGAGGACTTTGTGCCATGAGCATTCTTCAAATCAAACGGCTTTGCCACAATTTGGAATTTTTTCAAACGTTCGAGTTTGTGCAGATTATTCAAAAAATGAATCAACTGCACTGAATACCCCTGCACCAGGAAATGTAGAGTGCAAGTGTGGAATGCCTCTTTGCATATGTGAAGCTCCTGCTCCATCCACTGATAAGAATGATGAAAAGGGAAAAGCACACCCAACTTTAATGACAGCAGTTGAACTTCCTGCTCTAATGTCTATAATGCACCTGGTGTTTCAGGGTTTAAGGGAAGCAATAAAAAATGGAGACGTAATAGCTGTCAAGAAACTTCTCAATGAGGGAGTCGATGCAAATTACCGTGACAAGCAAGGATTATCCTTACTGCATTTGGCCGCACTCTTCAATCAAACTGATATTGTTTTCATCCTCATGGATTCTGGAGCAAACCTGGACTACAGGAATGCACAAGGAGAAACCCCAATAGACTGTGCTCCAGCAACCTTACAGTACAAAATGAGACAGAAGATGGAAGAAAGTGGAGCGATG 642 0.4377 EPPPFQEAARCDVCNCSFSTFKRRHHCRSCGRTLCHEHSSNQTALPQFGIFSNVRVCADYSKNESTALNTPAPGNVECKCGMPLCICEAPAPSTDKNDEKGKAHPTLMTAVELPALMSIMHLVFQGLREAIKNGDVIAVKKLLNEGVDANYRDKQGLSLLHLAALFNQTDIVFILMDSGANLDYRNAQGETPIDCAPATLQYKMRQKMEESGAM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01483 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 66 IPR013083 -
Pte2g01483 214 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Pte2g01483 214 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 66 212 - -
Pte2g01483 214 Gene3D - 120 213 IPR036770 -
Pte2g01483 214 Pfam Ankyrin repeats (many copies) 142 195 IPR002110 GO:0005515
Pte2g01483 214 SUPERFAMILY Ankyrin repeat 127 199 IPR036770 -
Pte2g01483 214 SMART fyve_4 4 62 IPR000306 GO:0046872
Pte2g01483 214 CDD FYVE_scVPS27p_like 4 59 - -
Pte2g01483 214 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 5 65 IPR017455 -
Pte2g01483 214 Pfam FYVE zinc finger 6 59 IPR000306 GO:0046872
Pte2g01483 214 ProSiteProfiles Ankyrin repeat region circular profile. 155 186 - -
Pte2g01483 214 SUPERFAMILY FYVE/PHD zinc finger 5 58 IPR011011 -
Pte2g01483 214 SMART ANK_2a 155 184 IPR002110 GO:0005515
Pte2g01483 214 SMART ANK_2a 122 151 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01483 Pte-Chr2 28422751 28427459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01483 134 213 MAP Kinase Kinase Kinase AT3G58760 32.500 2.25e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01483 - - qsa:O6P43_021964 296.204