Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01472 ATGGATGTGATTTGCCAAGCAAAGTCTGGTATGGGAAAAACTGCAGTCTTTGTTCTGTCTACTTTGCAGCAGATTGAACCTGTTGCTGGTCAAGTTTCTGCACTTGTTCTGTGTCATACAAGAGAATTAGCATACCAGATCTGCCACGAGTTTGAGAGGTTCAGTACCTACTTGCCTGATATCAAGGTTGCTGTTTTCTATGGAGGTGTCAACATTAAAGTTCATAAGACTTTACTCAAAAACGAATGTCCTCACATTGTTGTTGGAACTCCTGGTAGAATACTGGCTTTGTCTAGAGAAAAGGATCTTTCTCTTACCAATGTCAGACATTTTATCCTTGATGAGTGTGACAAGATGCTTGAATCACTTGACATGAGGAGAGATGTGCAGGAGATATTCAAGATGACTCCACATGATAAGCAAGTGATGATGTTTTCTGCAACCCTAAGCAAAGAAATTCGTCCAGTATGCAAGAAATTTATGCAAGATCCCATGGAAATTTATGTCGATGAAGAGTCCAAATTGACCCTCCATGGACTTGTGCAGCACTACATCAAATTGCGTGAGGAGGAGAAAAACAGGAAGCTAAATGACCTTCTCGATGCCCTTGACTTCAATCAAGTTGTTATTTTTGTCAAGAGTGTTAGCCGAGCAGCAGAGCTGGACAAGTTACTTGTTGAGTGCAACTTCCCGTCCATATGCATTCATTCTGGCATGTCCCAAGAAGAGAGGTTAAAACGCTACAAGGGTTTTAAAGAAGGCAACACAAGGATTCTAGTGGCAACTGATTTGGTTGGTAGGGGCATTGACATTGAGCGTGTAAACATTGTGATAAACTACGATATGCCAGACTCTGCGGACACATACTTGCACAGGGTTGGTAGAGCTGGAAGATTCGGCACAAAAGGACTTGCTATTACATTTGTTTCATGTCCTGCTGATGTTGATGTTCTCAACCATGTTCAAGCCAGGTTTGAGGTTGATATAAAGCAACTTCCTGAGCAGATTGACACTTCTACATATATGCCATCATAA 1035 0.4155 MDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVSALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKTLLKNECPHIVVGTPGRILALSREKDLSLTNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDEESKLTLHGLVQHYIKLREEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGNTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCPADVDVLNHVQARFEVDIKQLPEQIDTSTYMPS* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01472 344 Gene3D - 176 343 IPR027417 -
Pte2g01472 344 FunFam DEAD-box ATP-dependent RNA helicase 56-like 1 169 - -
Pte2g01472 344 CDD DEADc_DDX39 1 169 - -
Pte2g01472 344 FunFam DEAD-box ATP-dependent RNA helicase 176 344 - -
Pte2g01472 344 SMART ultradead3 1 183 IPR014001 -
Pte2g01472 344 Pfam DEAD/DEAH box helicase 2 153 IPR011545 GO:0003676|GO:0005524
Pte2g01472 344 CDD SF2_C_DEAD 180 309 - -
Pte2g01472 344 Gene3D - 1 175 IPR027417 -
Pte2g01472 344 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 179 340 IPR001650 -
Pte2g01472 344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 312 IPR027417 -
Pte2g01472 344 Pfam Helicase conserved C-terminal domain 193 300 IPR001650 -
Pte2g01472 344 SMART helicmild6 219 300 IPR001650 -
Pte2g01472 344 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 167 IPR014001 -
Pte2g01472 344 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01472 Pte-Chr2 27596882 27599656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01472 1 345 Eukaryotic Initiation Factors Gene Family AT5G11170 91.594 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01472 K12812 - gmx:100808957 659.833