LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte2g01468	ATGACGGATTATAAACCACTACAACAGAAGGCTGAATCAACTAATGATGCCCGCATAGAGTTTGAGCGTGGATTGGAGGATCTGATGCAGGGGCATTTGGATGATTGTATGCCATTTGCTTCATGCAGCTCCACACGTACTCAGGATGATGAGGATGATGAAGGGGAGCAGCTGGTCCGGAGGAGAAGAAGGGCTGACCTTGAAGGAGATGATTTGGCTGAGTCATCTGCTGCTAGGCGGCGACATTCACGGATTTTGAGCAGGTGGGCTGCACGGCAAGCACAAGAGATGATTACAACTATCGAGAGGAGGAATCGCGAAACTGAGTTGATGGCACTTGCAGGGTTGCACACAGTTTCCATGCTGGACTCCTCTTTTTTGAGGGGGTCGCAGTCAACGTCAAGTCGGCAAGGTTCTGTTGAGAGGCCCAGCACTCAAGCTTCTGCTATCTTGCAAATGTGGCGGGAATTGGAGGATGAGCATGTCTTGAATCGGGCACGTGAGAGGATGAGGGAAAGACTAAGACAACACAGGAGTGTTGATGCTAATACCAATACTTCAAATACAAATTTGTCAGATGGTCAGGGGAGTGAGAACCAGGGAAGTCTAGGGGATGCCAGTGAGAGTGAAAATGATTATGGGGCTTGGTCTCATGGTCAGATTGGGTCACAGAATGATCTCAGAGATAATGATCGATTTAGTAGGGAAGAATCACCTGATCTTGGTGATGTTGAAAGGGAGAGAGTGAGGCAGATTGTTAGGGGATGGATGGAAAGTGGCATTAGCAATCATTCATCAAATATTACTAGGAGAAGTAATGGTCCTAGGGCAGAATGGCTTGGTGAACCCGAGCGTGAAAGGGTGAGAATTGTTAGGGAGTGGGTGCAAACTGAAAGTCAACAAAGAGGATCTCGTGGTGGTCGGAGAGATGATGACAACAGTGAACGTGGTTCGCAGGCTGAAATAGTGCGTGATGCATTGGTTTCTGGTCATGAAGAAGGCCAACAAGAGCATGTTCGCAGGGACACGTTGAGGTTACGAGGAAGGCAAGCCCTAGTTGATTTGCTTGTGAGAACAGAGAGAGAAAGACAAAGGGAACTTCAGGCTCTGATGGAACACCGAGCTGTCTCTGATTTTGCTCATCGCAATCGCATACAGTCTTTACTTAGAGGTAGGTTCTTGCGGACGGAAAGAACTGTTGAGGAGGAGAGACCTCCTTCAATGGCAGCACATGAGTTAGTTCAATTAAGACAACGAAACACTGTATCTGGCTTGAGGCAAGGGTTTCACTCGAGATTAGAAAACATTGTCCATGATCAAGCAGACAGCCATTCGGATAATGAAGTTGATGATCCAAGGAATTATCAGAACCAAACAAGCAATTTGCAGGGTATCCATGAAGGAAATCAGGATAATGGACAAACCAGGAGTTCTGGACCTGATGTCCAACAGCAATCGGATCAAACTGTATCCTTACAAAGTAACACAACTGCTGAGAATCAGAGTTGGCAGGGATCTGGCCAGGAGCAAACTCGTGAAGATGAGGAAGGAAGGCGGCAGAGAACAACCTATGGTTCATTGAATCGGTTGGGAGACAACAATGCTGAAGATACGACTATAAATTGGCAGCAAAATGTAGCCAGTGATTGGCCTCAGGAAGCTTCTAGAAATGTAAGGGAATATCCACATGCACGAGAACCCCCGGGAGTACGGCGTGAGCATGCCCGAGGTGAGTTAACTGGAAACTGGTCTGAAGGGTCATCTGGTACTTTGAGGACTCGGCGGGGTGTTCATTTTAGAAGATTCAATAGATTTCATCCACCTGATGATGATAATGTGTACAGTATGGAACTTCGAGAGCTTTTGAGCAGAAGAAGTGTCTCAAACCTTCTACACAGTGGCTTCCGGGAAAGTCTGGACCAATTGATACAGTCTTATGTTGAAAGGCAAGGTCAGGCGCCCATTGATTGGGATTTGCACAGGAATTTGTCGACAACGGATCCTGCTTCACCACAACAGGACCAAGAAAATGAAAGAGACATGCAGAATGAGGATCAACGTGATGCCATTAACACGCCTTCACTGGTTTTGCCACCACCTCCATTGCCTCCACCACAGCCACTCTGGCACCAGGCCTTACATAACACTGGCTGGTCTCGTCATAGGATGCACCGCTCCGATATCGAATGGGAGATGATTAATGATTTGAGAGCAGATATGACAAGACTTCAGCAGGGCATGAGTCACATGCAGAGGATGTTGGAGTCATGCATGGATATGCAGCTGGAGTTACAACGTGCTGTCAGACAGGAAGTTTCTGCTGCTCTGAACCGAGCAGCTGGTGATAGAGGGTTGGGTGCTGGGACCTCAGAGGATGGATCTAGGTGGGGTCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAATCATATCGATTCACTTCTGTATAGATGCGGGCACATGTGCACTTGCTCAAAATGTGCAAATGAGTTGGTTCGTGGAGGAGGAAAGTGCCCTCTGTGCCGAGCACCGATCATTGAGGTGGTCCGGGCATATTCGGTATTGTAA	2571	0.4749	MTDYKPLQQKAESTNDARIEFERGLEDLMQGHLDDCMPFASCSSTRTQDDEDDEGEQLVRRRRRADLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRETELMALAGLHTVSMLDSSFLRGSQSTSSRQGSVERPSTQASAILQMWRELEDEHVLNRARERMRERLRQHRSVDANTNTSNTNLSDGQGSENQGSLGDASESENDYGAWSHGQIGSQNDLRDNDRFSREESPDLGDVERERVRQIVRGWMESGISNHSSNITRRSNGPRAEWLGEPERERVRIVREWVQTESQQRGSRGGRRDDDNSERGSQAEIVRDALVSGHEEGQQEHVRRDTLRLRGRQALVDLLVRTERERQRELQALMEHRAVSDFAHRNRIQSLLRGRFLRTERTVEEERPPSMAAHELVQLRQRNTVSGLRQGFHSRLENIVHDQADSHSDNEVDDPRNYQNQTSNLQGIHEGNQDNGQTRSSGPDVQQQSDQTVSLQSNTTAENQSWQGSGQEQTREDEEGRRQRTTYGSLNRLGDNNAEDTTINWQQNVASDWPQEASRNVREYPHAREPPGVRREHARGELTGNWSEGSSGTLRTRRGVHFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLHSGFRESLDQLIQSYVERQGQAPIDWDLHRNLSTTDPASPQQDQENERDMQNEDQRDAINTPSLVLPPPPLPPPQPLWHQALHNTGWSRHRMHRSDIEWEMINDLRADMTRLQQGMSHMQRMLESCMDMQLELQRAVRQEVSAALNRAAGDRGLGAGTSEDGSRWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIIEVVRAYSVL*	857

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	53	79	-	-
	Pte2g01468	856	ProSiteProfiles	Zinc finger RING-type profile.	804	843	IPR001841	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	452	508	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	438	535	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	180	227	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	303	319	-	-
	Pte2g01468	856	CDD	mRING-HC-C3HC5_NEU1	801	853	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	228	246	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	694	708	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	41	79	-	-
	Pte2g01468	856	SUPERFAMILY	RING/U-box	803	849	-	-
	Pte2g01468	856	Coils	Coil	91	111	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	661	711	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	127	146	-	-
	Pte2g01468	856	Pfam	Zinc finger, C3HC4 type (RING finger)	801	848	-	-
	Pte2g01468	856	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	790	854	IPR013083	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	174	246	-	-
	Pte2g01468	856	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	111	855	-	-
	Pte2g01468	856	MobiDBLite	consensus disorder prediction	292	319	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte2g01468	Pte-Chr2	27336496	27341563	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte2g01468	783	850	C3H Transcription Factor Family	AT3G06140	39.130	2.67e-07	52.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte2g01468	-		-	cave:132186690	1216.06