Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01452 ATGAAGGTGTTTGACTCTTGGATTGGAAAAAGCAAACAGCACTGCACTTTTACCTGTTCTAATATTGAACGAGGTCAGTCTATTGATGGATTTACGGGGACCAAGGTTCAATTAAACTCATTGATTCTTGAGGGGAGGAGTACAAGCTTCCATGAAAAGTATGATGGAGTTGAGCAGGTGAATGTTCTTTATCTGTGGCATGTTGCTATCAGGAATTATTTACAAGAAATTCTCGGAGAGCTCTATGAAATGAGAAACTCCAGCAGTTTTCAGATGTTGGATTCAATATTGCTCGAGCTGAAATTCATCACAAATGTCACCATGTGCTATAGTAATGCTCAAGAGAAGTTCTTGCATCCGCTATTAAATTCACTGGACACTGATCGAGTGTCTTTGTCAAAGCAACATCTGCTCACTGAAAATCATCTTGAAGGTTTAGTAAGGTTGATATTTGGCTATTTACAAAATGGAATGTCATTCAGCAAGTTTGTGGAGGAGCTTTGCGGAGAACTGAAGCTATTTATAGTAGAAGTCAGCACACAATTCACGTTTCAAGAAACTGAGGTATTTCCTGCAATTACTAAGAGTTATGGTCAGCAGATACAGGCAAGGCTTCTCTATATGAGCCTGAAAATGATGCCGCTTGGGTTGCTAAAATCTGTGGTTTCATGGTTTGCAGCTTGTCTATCAGAAAATGAGTCCAGGTCGATTCTTTATGACCTAAAATGGGGAGACTGCTTAGTCCATAAATCTTTTGCGTCCCTGTTAAATGAGTGGTTTCAAATTGGCACTTCAGGTAAAACATCTATTGACAAGTTCCAACGAGAATTGCAGCAAACTTTTAAAAGCAGATATTCTTTTTTATCTGAGCCAATCAACAAAAATGGTAGATTTGCTTTCTCAAATGCTGATATACAACATTGTAAAGCATCTGCTACCTCTTACATTGGGGACAAGAAAAGTTTGTCCTCTTCATTGGCTGGACCACACAATGTGAAAAAATCTGGCGTGCCTTACTCAAGTGGAATCAATCTGCACGTTCTTTTTCCTCAAACAACAAAGATGTTGCATCCTTATCCTAGATTTCCATTGAAGAATGCCTCTGGCAGTTCAGTTGTTAGTGAAATGAAACCGATTGACATAATTGTTTTCTTCCACAAGGCTATCAAGAAAGACTTGGATTATCTCGTTGTGGGTTCCGCACAGTTAGATCAAAATGATGAATTGCTGACTGAATTTTGCAAAAGGTTTAATGTCATACGAACTTTAAACCAAATACATACCAATTCAGAAGATGATATTGCATTTCCAGCCTTGGAAACCAAGGTGAAACTCAAAAACATGAGCCAGTCTTACACAATTGATCACAAGCTTGAAGTTCAACACTTCAGAAAAATCTCCCTTATTCTAGAAGAGATGTTTGAATTGCAAAATAAAAAATGTAGTGCTGATTCACGTACTTTGGATCAGAGAATCCTGAAGCACCATCAACTCAGCAGGAAGCTCCATGAACTGTGCACATCTCTGCATAAAGTACTTTTTGACCATCTCAATCACGAAGACATAGAAATATGGCCTTCATTTCGAGAATCATTTTCTAATGAGGAGCAGGAGAAGGTCGTAGGAAATATGCTAGGAAGAATAGGAGCAGATATATTACAAAATATGATACCCTGGCTAATGGAGTCTTTGACGCAGGAAGAGCAGCATGCTTTGATGTTCTTATGGTCAATTGCTACCAAAAATACAATGTTTGACGAATGGTTAGGAGAATGGTGGGATGGATACAGTATTGCTAAGTTGGAAAAGGAGACAAGCAATTCTTCGTGTAATGTAGATCCACTGGAGATTGCCACAAAATATTTGTCTAAAGAAATTCGGGATGAACCGTGCGGAGCGGCTACAACTGAAAAGAGCGGAGGTTTTTGTCATAATGATCATGCTGATGTCGATGTCGAATTTTCCATGAATTGTGATGATGTCAGCAATGCTAACATGCTTAAGGGAGAGAAAGAGAAAGAGAATTGTGAATACTCTGAATGTAACAAAATTCTGAGTGACACAAGCAAAAGTACATGCAGTAATGTAGAAAATTATACAAGTCAATTAGATAAGGGATGCCTACCTTTTAAAGTTGGTCCGGATGCTGAGCGCTATAAACATCTTCTGACAATCAGTCAAGAGGATCTGGAGACTGCAATACGTAAAGTATCCCGTGATACCTCCTTGGATTCAGAAAAGAAATCATTGATAATTCAGAATCTGCTTATGAGCCGCTGGATAGTGAGACAGAGGATCTCTCATTTAGTAGTTGGTACAGAAACCAGGCAAGACTTTCCTGGTCAGGATCCTTCTTACAGAGATCCTCTTGAAGAAGTCTTTGGTTGCAAACACTACAAAAGGAACTGCAAACTTTTTTTCCCGTGTTGTGACCAGCTCTTTACATGCATACGCTGTCATGATGAATTCGCTGATCATTCAGTGGATAGAAAATCTATTACAAGTATGATGTGCATGAAATGCTTAATAATTCAGCCTATCAGTAGCAGATGCTCAACGGTTGCTTGCAATAACTTATCCATGGCAAAATACTACTGCAGGATTTGCAGATTGTTTGATGATGAAAGGAAAATTTATCATTGTCCCTATTGCAACCTTTGCCGAGTGGGAAAAGGATTAGGTCTGGATTACTTTCATTGCATGAAATGCAATGCTTGTATGTCCCTTTCGCTAGCAGTCCATAGTTGCAGAGAAAAATGTCTGGAGGACAACTGTCCAATATGCCATGAGTACATCTTCACATCCTCTGCACCCGTGAAGGCACTTCAGTGTGGTCATCTGATGCACTCATCATGCTTTCTGGAATATACAATCACTCATTATACCTGTCCAATTTGTAGCAAGTCACTTGGGGACATGCAGGTATATTACAGAATGTTGGATGTATTGTTGGCAGAGGAGAAAAATTCAGATGAGCTTCCACAGAAAACTCAGATGAACCAGGAAAATGCGCAGTCATTTGAGGGAAACCAGGTTCTCTCCTTCCTCTCCAAATCCCAAGAAACCAAAGGTTATAATGAAAAGGAGAAACAGGCACACAGCACACACATGATTTGA 3117 0.3933 MKVFDSWIGKSKQHCTFTCSNIERGQSIDGFTGTKVQLNSLILEGRSTSFHEKYDGVEQVNVLYLWHVAIRNYLQEILGELYEMRNSSSFQMLDSILLELKFITNVTMCYSNAQEKFLHPLLNSLDTDRVSLSKQHLLTENHLEGLVRLIFGYLQNGMSFSKFVEELCGELKLFIVEVSTQFTFQETEVFPAITKSYGQQIQARLLYMSLKMMPLGLLKSVVSWFAACLSENESRSILYDLKWGDCLVHKSFASLLNEWFQIGTSGKTSIDKFQRELQQTFKSRYSFLSEPINKNGRFAFSNADIQHCKASATSYIGDKKSLSSSLAGPHNVKKSGVPYSSGINLHVLFPQTTKMLHPYPRFPLKNASGSSVVSEMKPIDIIVFFHKAIKKDLDYLVVGSAQLDQNDELLTEFCKRFNVIRTLNQIHTNSEDDIAFPALETKVKLKNMSQSYTIDHKLEVQHFRKISLILEEMFELQNKKCSADSRTLDQRILKHHQLSRKLHELCTSLHKVLFDHLNHEDIEIWPSFRESFSNEEQEKVVGNMLGRIGADILQNMIPWLMESLTQEEQHALMFLWSIATKNTMFDEWLGEWWDGYSIAKLEKETSNSSCNVDPLEIATKYLSKEIRDEPCGAATTEKSGGFCHNDHADVDVEFSMNCDDVSNANMLKGEKEKENCEYSECNKILSDTSKSTCSNVENYTSQLDKGCLPFKVGPDAERYKHLLTISQEDLETAIRKVSRDTSLDSEKKSLIIQNLLMSRWIVRQRISHLVVGTETRQDFPGQDPSYRDPLEEVFGCKHYKRNCKLFFPCCDQLFTCIRCHDEFADHSVDRKSITSMMCMKCLIIQPISSRCSTVACNNLSMAKYYCRICRLFDDERKIYHCPYCNLCRVGKGLGLDYFHCMKCNACMSLSLAVHSCREKCLEDNCPICHEYIFTSSAPVKALQCGHLMHSSCFLEYTITHYTCPICSKSLGDMQVYYRMLDVLLAEEKNSDELPQKTQMNQENAQSFEGNQVLSFLSKSQETKGYNEKEKQAHSTHMI* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01452 1038 SUPERFAMILY RING/U-box 924 976 - -
Pte2g01452 1038 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 422 1030 - -
Pte2g01452 1038 Pfam Ring finger domain 923 966 IPR001841 -
Pte2g01452 1038 ProSiteProfiles Zinc finger RING-type profile. 925 967 IPR001841 -
Pte2g01452 1038 Pfam CHY zinc finger 796 871 IPR008913 GO:0008270
Pte2g01452 1038 SUPERFAMILY CHY zinc finger-like 787 852 IPR037274 GO:0008270
Pte2g01452 1038 ProSiteProfiles Zinc finger CTCHY-type profile. 861 924 IPR017921 -
Pte2g01452 1038 SMART ring_2 925 966 IPR001841 -
Pte2g01452 1038 CDD Hr-like 380 526 - -
Pte2g01452 1038 SUPERFAMILY Zinc hairpin stack 862 916 IPR037275 -
Pte2g01452 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 924 1010 IPR013083 -
Pte2g01452 1038 Gene3D nmb1532 protein domain like 56 207 - -
Pte2g01452 1038 Gene3D nmb1532 protein domain like 376 547 - -
Pte2g01452 1038 CDD RING-H2_Pirh2-like 924 967 - -
Pte2g01452 1038 FunFam Zinc finger protein-related isoform 1 920 969 - -
Pte2g01452 1038 ProSiteProfiles Zinc finger CHY-type profile. 789 858 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01452 Pte-Chr2 26335294 26343820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01452 686 998 C2H2 Transcription Factor Family AT3G18290 51.592 6.29e-105 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01452 K16276 - qsa:O6P43_022786 1165.98