Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte2g01446 | ATGGATGCACTCACATCGAACCATAACCTAACACCCGTGGAAACCTTAGACCCCACTCAAGCCTCCTCACATGAACAATCTTCATACTACCAGTTTCAGAACGCGCAGCCGTCGGAACAACCGCCTGTACCCTTGGGTAATGAAAACCCATCGAAAACTGTAATTTTTTACGGTCAGAACAATAACCATGACGTTGGTCATGAATCTGAATCGAAGCCATCTGATAATTCATTGAAGCCCGAGCTCCCGAGACCATTGTTGTCGGAGAATGGATTCACGGTTACGAATACCCAGAGCGGTACTGATAGGGATCAGTCTGGTGGTGAGGAGGAGACAACAAGTAGGAGGCGAAGGAGGAGTCGTTGGGACCCACAGCCGGAATCGAATGACCAGAACGGTGCTGGTGGCGGCGGTGAAGCTGGTAGTGGAACAAAGAAGAGAAAGTCAAGATGGGCTGATGATGAGCCAAAACCAGTAATTCAGCTTCCTGATTTTATGGGCGGTATTGAATTTGATCCTGAAATACAAGCTTTGAATAGTAGGTTACTTGAGATTAGTAGGATGTTACAATCTGGTTTGCCTCTAGATGATCGTCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTTTATATGATAATATGGGAATTAGGATTAATACTCGGGAGTATCGTGCTCGAGAGAGATTGCAAAAGGAGAGGCAAGAAATTATTTCTCAGATTTTGAAGAAAAACCCTGCTTTTAGGCCTCCTGCTGATTATAGGCCACCAAAGCTTCATAAGAAGCTCTATATACCAATGAAGGAGTATCCTGGATACAACTTCATAGGCCTTATTATTGGACCCAGGGGAAATACCCAGAAGCGGATGGAGAAAGAAACTGGTGCCAAAATTGTTATCAGGGGCAAAGGATCGGTGAAGGAGGGTAGATTGCAACAGAAGCGGGATTTGAAACCTGATCCTTCGGAGAATGAGGATTTACATGTTTTGGTTGAGGCGGAGACTCAGGAATCACTAGATGCTGCTGCAGGTATGGTAGAGAAGCTCTTACAACCTGTGGATGAGGTTTTAAATGAGCATAAGAGGCAACAACTTCGGGAGCTTGCAGCTCTTAATGGGACAATTAGGGATGAGGAGTACTGTCGGTTGTGTGGTGAGCCAGGTCATCGTCAGTATGCTTGTCCCACCCGTACTTCTACATTCAAGAGTGAAGTTGTATGCAAGTTTTGTGGAGATGGTGGTCATCCAAGCATTGACTGTCCAGTTAAGGGTGCAACCGGTAAGAAGATGGATGACGAGTATCAAAACTTCTTGGCTGAGTTAGGAGGGACAGTTCCTGAATCAGCCACAAAGCAAAGTAGCACATTGGCAATTGGTTCAGGTAGTTCTGGGAGTAATCCACCTTGGTCTAACAATTCCAGTTCTGCAAGCAGTACGCCACAACCTGGTTTAGGGGCCCCTGGAATAAAGAAGGAAATCGATGATACAAATCTGTATATTGGGTATTTGCCTCCGACTCTTGAGGATGATGGGTTGATTCAGTTGTTTCAGCAATTTGGTGAGATTGTGATGGCCAAAGTTATTAAGGACCGTGCAACCAATCTGAGTAAAGGTTATGGTTTTGTCAAGTATGCTGATATCCAAATGGCCAATAATGCTATTATGGCTATGAATGGTTATCGACTTGAAGGACGGACTATAGCAGTGAGAGTTGCTGGCAAACCACCTCAGCCAACTGTACCTCCTGGTCCTCCAGCATCTGCATTGGCACCGACGTATCCTGTTGCAAGCCAAGCAGTTGCGGCATATCCATCTCAGCAATATGCGGCTGGTGGTCCCCTAGGGACTGCACCTCGTCCAGGTTATACCGGTGCACCTGTTTCATGGGGCCCTCCCGTTCCTCCTCCTTATGCTGCGTATCCTCCTCCCCCACCTGGGTCAACTATGTATCCTAGTGGACAAGGTCAACCCATGCCTCCATACGGCGTTCAGTATCCTCCATTAGTTCAGACAGTTCCACCTGGTGCCCCTTCCCAAGTAGGTGCTACTGGTGAATTGCAACAGAGTTATTACCCTCCTGGAGTAACATCAGACAGTAGTGCCACCACTCAATCTGCAACGGCTAATATCTATGGCTCTGTTCCACCAGCTGTGCAACCTGCTTATCCTACATCTTATGCCTATACACCATATTTTGGTGGTGTTCCGCCTCCTCCACCTGGACCGGTACCCTCATCATCTGGAGACCAATCGCAGAGCATTGGAAATGTTCCTTGGGCTACAAACCCTCCTTTACCTACAACTGCATCTATCTCAGCCGTGGACCAGTCACAGAGCCTTGTGAATGTGCCTTGGGCCTCGAATGCCTCCGTACCTCCTCCTCCATCTACCGACAAAGCAACCTATGGGACAGACTCAGAGTATGAAAAATTTATGGCAGAGATGAAATGA | 2448 | 0.4718 | MDALTSNHNLTPVETLDPTQASSHEQSSYYQFQNAQPSEQPPVPLGNENPSKTVIFYGQNNNHDVGHESESKPSDNSLKPELPRPLLSENGFTVTNTQSGTDRDQSGGEEETTSRRRRRSRWDPQPESNDQNGAGGGGEAGSGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPLYDNMGIRINTREYRARERLQKERQEIISQILKKNPAFRPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKFCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESATKQSSTLAIGSGSSGSNPPWSNNSSSASSTPQPGLGAPGIKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRATNLSKGYGFVKYADIQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASALAPTYPVASQAVAAYPSQQYAAGGPLGTAPRPGYTGAPVSWGPPVPPPYAAYPPPPPGSTMYPSGQGQPMPPYGVQYPPLVQTVPPGAPSQVGATGELQQSYYPPGVTSDSSATTQSATANIYGSVPPAVQPAYPTSYAYTPYFGGVPPPPPGPVPSSSGDQSQSIGNVPWATNPPLPTTASISAVDQSQSLVNVPWASNASVPPPPSTDKATYGTDSEYEKFMAEMK* | 816 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte2g01446 | 815 | SMART | kh_6 | 258 | 350 | IPR004087 | GO:0003676 | |
Pte2g01446 | 815 | Gene3D | - | 445 | 578 | IPR012677 | - | |
Pte2g01446 | 815 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 258 | 384 | IPR036612 | GO:0003723 | |
Pte2g01446 | 815 | Pfam | KH domain | 273 | 321 | IPR004088 | GO:0003723 | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 737 | 768 | - | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
Pte2g01446 | 815 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 495 | 573 | IPR000504 | GO:0003723 | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 447 | 487 | - | - | |
Pte2g01446 | 815 | ProSiteProfiles | Type-1 KH domain profile. | 273 | 345 | - | - | |
Pte2g01446 | 815 | Pfam | Splicing factor 1 helix-hairpin domain | 147 | 254 | IPR032570 | - | |
Pte2g01446 | 815 | FunFam | splicing factor-like protein 1 | 250 | 378 | - | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 1 | 161 | - | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 784 | 801 | - | - | |
Pte2g01446 | 815 | SUPERFAMILY | Retrovirus zinc finger-like domains | 376 | 422 | IPR036875 | GO:0003676|GO:0008270 | |
Pte2g01446 | 815 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 497 | 566 | IPR000504 | GO:0003723 | |
Pte2g01446 | 815 | SUPERFAMILY | RNA-binding domain, RBD | 492 | 583 | IPR035979 | GO:0003676 | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 680 | 701 | - | - | |
Pte2g01446 | 815 | FunFam | splicing factor-like protein 1 | 475 | 577 | - | - | |
Pte2g01446 | 815 | CDD | KH-I_BBP | 257 | 350 | - | - | |
Pte2g01446 | 815 | SMART | rrm1_1 | 496 | 569 | IPR000504 | GO:0003723 | |
Pte2g01446 | 815 | ProSiteProfiles | Zinc finger CCHC-type profile. | 380 | 394 | IPR001878 | GO:0003676|GO:0008270 | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 784 | 804 | - | - | |
Pte2g01446 | 815 | PANTHER | RNA-BINDING PROTEIN RELATED | 104 | 616 | IPR045071 | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 745 | 768 | - | - | |
Pte2g01446 | 815 | FunFam | splicing factor 1 | 378 | 431 | - | - | |
Pte2g01446 | 815 | Gene3D | - | 378 | 431 | - | - | |
Pte2g01446 | 815 | SMART | c2hcfinal6 | 405 | 421 | IPR001878 | GO:0003676|GO:0008270 | |
Pte2g01446 | 815 | SMART | c2hcfinal6 | 379 | 395 | IPR001878 | GO:0003676|GO:0008270 | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 303 | 323 | - | - | |
Pte2g01446 | 815 | Gene3D | K Homology domain, type 1 | 255 | 377 | IPR036612 | GO:0003723 | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 192 | 213 | - | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 672 | 701 | - | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 143 | 157 | - | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 104 | 125 | - | - | |
Pte2g01446 | 815 | Gene3D | - | 172 | 250 | IPR047086 | - | |
Pte2g01446 | 815 | MobiDBLite | consensus disorder prediction | 447 | 481 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte2g01446 | Pte-Chr2 | 25792029 | 25797648 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte2g01446 | 495 | 626 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 30.435 | 1.85e-10 | 62.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte2g01446 | K13095 | - | qsa:O6P43_029889 | 1107.05 |