Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01439 ATGGGGAATCCTGTAGTGCCTGATGCACCACACACATACCCATATCCAGACCCATACTATAGAAGCATATTTGCTCCCTATGATGCACAAGCACAACCATTTACGCCGGTGCCCTATGGTGGACAGCCCATGGTCCATCTTCAGCTAATGGGAATCCAACAAGCTGGTGTGCCTTTGTCATCAGATGCAGTTGAGGAGCCTGTGTTTGTTAATGCAAAGCAGTACCATGGTATATTGAGGCGCAGGCAATCTCGTGCCAAAGCTGAATCTGAAAGTAAAGCTGTCAAGTCCCGAAAGCCATACTTGCATGAATCTCGACATTTGCATGCAGTAAGAAGAGCTAGAGGATGTGGAGGTCGATTTTTGAAGAAAACAGAGAACCATAAGGAGGCGCTTTCAGCTGACAAATCTCAGGCTAATATCAATCTCAATTCGGATAAAAGTGATCAGGACACATCAGATAGGACATCGTAG 474 0.4578 MGNPVVPDAPHTYPYPDPYYRSIFAPYDAQAQPFTPVPYGGQPMVHLQLMGIQQAGVPLSSDAVEEPVFVNAKQYHGILRRRQSRAKAESESKAVKSRKPYLHESRHLHAVRRARGCGGRFLKKTENHKEALSADKSQANINLNSDKSDQDTSDRTS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01439 157 ProSitePatterns NF-YA/HAP2 subunit signature. 69 89 IPR018362 GO:0003677|GO:0016602
Pte2g01439 157 PRINTS CCAAT-binding transcription factor subunit B signature 67 89 IPR001289 GO:0003700|GO:0006355
Pte2g01439 157 PRINTS CCAAT-binding transcription factor subunit B signature 98 121 IPR001289 GO:0003700|GO:0006355
Pte2g01439 157 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 13 154 IPR001289 GO:0003700|GO:0006355
Pte2g01439 157 Gene3D - 64 125 - -
Pte2g01439 157 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 66 121 IPR001289 GO:0003700|GO:0006355
Pte2g01439 157 Coils Coil 122 142 - -
Pte2g01439 157 SMART cbf3 63 124 IPR001289 GO:0003700|GO:0006355
Pte2g01439 157 MobiDBLite consensus disorder prediction 81 109 - -
Pte2g01439 157 ProSiteProfiles NF-YA/HAP2 family profile. 64 124 IPR001289 GO:0003700|GO:0006355
Pte2g01439 157 MobiDBLite consensus disorder prediction 128 157 - -
Pte2g01439 157 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01439 Pte-Chr2 24483434 24484611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01439 9 158 CCAAT-HAP2 Transcription Factor Family AT1G30500 65.359 7.39e-61 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pte2g01439 CBFB_NFYA 3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01439 K08064 - cave:132172492 245.743