Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01422 ATGAAAACCATTCTTTCATCAGAGACAATGGACATTCCTGACGGCGTCAGCTTGAAGGTGAGTGCTAAGGTGATCGAGGTTGAAGGTCCACGAGGGAAACTAACTCGTAACTTCAAGCACCTTAACCTTGATTTTGACCTTATTACTGATCCCGAAACTGGTAAGAGAAAGCTCAAGATTGATGCTTGGTTTGGATCTCGCAAGGCATCTGCTGCTATTCGAACTGCTCTCAGCCACGTTGAGAATCTCATCACTGGCGTCACCAAGGGCTATCGCTACAAGATGAGGTTTGTTTATGCTCACTTCCCCATCAATGCTAGCATCACCAACGGTAGCAAGGCCATCGAAATTAGGAACTTTCTTGGCGAGAAGAAGGTAAGAAAAGTGGATATGCTTGAAGGGGTGGCTATCATTCGATCTGAGAAGGTTAAGGATGAGCTCATAGTCGAAGGAAATGACATTGAGCTTGTTTCTCGGTCCTGTGCTCTCATTAACCAGGTGTTTGTCACTATCAGCCCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCACTCTCTCTCACAGACACACACACACGATCGTTTGCCCAAACCCACGGATATATCCTGTTGCACACTTTCTAGAATCTATTTTAGGAAAAGTTTGA 651 0.4562 MKTILSSETMDIPDGVSLKVSAKVIEVEGPRGKLTRNFKHLNLDFDLITDPETGKRKLKIDAWFGSRKASAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASITNGSKAIEIRNFLGEKKVRKVDMLEGVAIIRSEKVKDELIVEGNDIELVSRSCALINQVFVTISPPLSLSLSLSHSLTLSHRHTHTIVCPNPRIYPVAHFLESILGKV* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01422 216 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 1 167 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte2g01422 216 FunFam 50S ribosomal protein L6 91 172 - -
Pte2g01422 216 Gene3D - 91 171 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte2g01422 216 Pfam Ribosomal protein L6 105 167 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte2g01422 216 Pfam Ribosomal protein L6 12 90 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte2g01422 216 SUPERFAMILY Ribosomal protein L6 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte2g01422 216 FunFam 60S ribosomal protein L9 1 90 - -
Pte2g01422 216 SUPERFAMILY Ribosomal protein L6 91 167 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pte2g01422 216 Gene3D - 1 90 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01422 Pte-Chr2 23168901 23170749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01422 1 166 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 81.928 2.48e-101 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01422 K02940 - qsu:112024680 300.827