Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01397 ATGTACAATTTTGCTTGTCACATACGAAACAGGCCATCGCCAAACCTGGAACATCCTTCACGTTTTCTGAGAGCCGTTACCAAAACCCACAACGCAAATGATCCATCACGCGCCACGGGGATGAGCGGAATTTTAATAGCCTACATGTGCCTGTTCTGGTATGTCTCAAGTCACAGGAGGCTGAGAGGTTCACCACCTGTGAAAATATCTTCCATCAAAGGACTTTCGCCTTCGGAGCTGGAGATGTTACCTAAAGTGACAGGGAAAGAGTTGGTCGTGGGGACTGAGTGTGCTGTATGCCTTGATGAAATTGAAAGCCACCAACCAGCTCGAATTATTCCTGGTTGCAACCATGGCTTCCATCTCGAATGCGCTGACACTTGGCTTTCCAACAATCGTTTGTGCCCGGTCTGCAGAGCTAAGCTCGACCCTCAGTTTTTCAGTTTCTCCTCTCATAATACATGCTGA 468 0.4786 MYNFACHIRNRPSPNLEHPSRFLRAVTKTHNANDPSRATGMSGILIAYMCLFWYVSSHRRLRGSPPVKISSIKGLSPSELEMLPKVTGKELVVGTECAVCLDEIESHQPARIIPGCNHGFHLECADTWLSNNRLCPVCRAKLDPQFFSFSSHNTC* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01397 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 147 - -
Pte2g01397 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 145 IPR013083 -
Pte2g01397 155 Pfam Ring finger domain 96 139 IPR001841 -
Pte2g01397 155 SUPERFAMILY RING/U-box 96 145 - -
Pte2g01397 155 SMART ring_2 97 138 IPR001841 -
Pte2g01397 155 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01397 Pte-Chr2 21466648 21467437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01397 39 146 C3H Transcription Factor Family AT5G42200 54.867 9.00e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01397 K19037 - rcu:8267829 172.94