Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01390 ATGAAAGGTGGAAGGTCTAAGAGCGAATCTAAGAAAGCCGATGCTAAGCTTGCGGTGAATAAGAAAGGAGCCACCAAGGGTGGAAAATCGAGTAAGGGGAAGGCAGCCAAAGATCCTAACAAGCCAAAGAGGCCCGCTAGTGCCTTCTTCGTTTTCATGGAGGAGTTCAGGAAACAATTCAACAAGGAAAATCCGGGGAACAAAGCAGTATCTGCTGTTGGCAAGGCTGCTGGAGCTAAATGGAAGACCATGTCTGAAGCTGAGAAACAACCTTACGCGCTAAAGGCCGAGAGGCGTAAGGCTGATTACGAGAAGGACATGAAGGCTTATAACAAGAGACAGGCTGAAGGTAACAACGCAGCAGAGGAAGAGGAATCAGAAAAGTCAATATCTGAGGTGAATGATGAAGATGAGGGAGATGAGGATGGTAGTGACGAGGTTCGATTGAATACTTATACCAATGTGTACTATTTATCCCTGTCTTGA 486 0.4609 MKGGRSKSESKKADAKLAVNKKGATKGGKSSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPGNKAVSAVGKAAGAKWKTMSEAEKQPYALKAERRKADYEKDMKAYNKRQAEGNNAAEEEESEKSISEVNDEDEGDEDGSDEVRLNTYTNVYYLSLS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01390 161 Pfam HMG (high mobility group) box 42 111 IPR009071 -
Pte2g01390 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 142 IPR031061 -
Pte2g01390 161 MobiDBLite consensus disorder prediction 90 148 - -
Pte2g01390 161 MobiDBLite consensus disorder prediction 1 46 - -
Pte2g01390 161 MobiDBLite consensus disorder prediction 1 19 - -
Pte2g01390 161 SMART hmgende2 41 112 IPR009071 -
Pte2g01390 161 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 42 111 IPR009071 -
Pte2g01390 161 SUPERFAMILY HMG-box 29 119 IPR036910 -
Pte2g01390 161 MobiDBLite consensus disorder prediction 91 127 - -
Pte2g01390 161 MobiDBLite consensus disorder prediction 128 144 - -
Pte2g01390 161 Coils Coil 93 127 - -
Pte2g01390 161 Gene3D High mobility group box domain 25 132 IPR036910 -
Pte2g01390 161 CDD HMG-box_AtHMGB1-like 43 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01390 Pte-Chr2 21085355 21088483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pte2g01390 HMG_box 5.9e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01390 K25507 - qsa:O6P43_016371 203.371