Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte2g01349 ATGGATGTGACACAAGAAGATGGCACTGTTGTAGGGGTCCAACCTCCAAATAAGCAGGAAACTGATAATGTGTTAGAGAAGAAGTATCAGAGAGGAACACCACTTGATGTTTCGACTTTGGGAGATAAAAAGCTGAGGGGTAAACTTGCTGTTAGGGAAAAGTTATATGGAAAATCTGTCAAAGCTGCCACTGAATTTGAGAAGTGGCTGCTGCCATTGCCAAGTAAGGGGTCTTTTTTGGAACCCGAAGGGGTAGAGAAGACATACAGGATCAGACAAGAGTCATTTGTTAATGAAGTGGACCCTTTAAGCTCAAAAAATCTACATGATATTACATTACCAGAACTTGGACCATACACTTTGGATTTTACTTCGAGTGGCCGTTATATGGCTCTTGCAGGCAGAAAGGGACATCTAGGTATAATAGACATGATGCAACTAAATTTGGTCAAGGAGTTTCAGGTTAGGGAGACAGTTCGAGATGTGGTTTTCTTGCATAATGAGCTATTCTTTGCTGCTGCTCAGAAAAAGTACCCTTATATATACTATAGGGATGGAACAGAGCTTCACTGCCTTAAGGAGCATGGGTCAGTATTGCGACTTCAATTTTTGAAAAACCACTTTCTCTTGGCAACAATAAATAAAGTTGGGCAGCTTCATTATCAGGATGTCACAACAGGGGTAATGGTTGCTAATTTCCGAACTAGCTTAGGACGTACTGATGTAATGCAAGTGAACCCATTCAATGCAGTTCTTGGTTTGGGTCATTCAGGTGGTACAGTTACAATGTGGAAGCCTACTGTTTCTGCTCCACTTGTAAAAATGTTGTGTCACCGTGGACCTGTCTCAGCATTGGCTTTTGACCCAAGTGGCTATCTGATGGCTACTGCTGGGAAGGATAAAAAGATTAAGCTTTGGGACTTGCGGAAGTTTGAGGTTCTGCAATCTTTTACCGGCCATGCGAATACCTTGAGTTTTAGCCAAAAAGGTTTGCTTGCTTGCGGTAATGGCTCATTCGTACAGGTTCTTTCTAATTTGTCTGGAACTCAGAATTATGATAGATATATGACCCATTCAATGGTGAAAGGCTACCAAATTAAAAAGGTGCAATTTCGACCCTATGAAGATGTTCTGAGTATTGGGCACTCGATGGGATTTTCAAGTATTCTCATTCCAGGATCTGGAGAACCTAATTTTGATTCTTGGGTTGCAAACCCTTTCGATACTCCTAAACAGAGGAGAGAGAGAGAAGTTGCCCTTCTTTTGGACAAGCTTCCACCTGAAACTATCATGTTGGATCCTAGAAAAATCGGTACAGTACAGGCAGATAAAAGGAAAGAGAAGCAGACAAAGCAAGAGAGAGAAGCTGAAAAAGAAGCTGCTGTAGAGGCAGCTAAGACTGTAACCTTGAAAAACAAAACGAAAGGGAGAAATAAGCCTAGTAAAAAGGCTAAAAAGAAACAGGACTTGGTTGTGAATGCCAAGAGGCCTTATGTGGAGCAGCAGCTGAAGGAGGAAGAATCCATGTCTAGAAGGAAGAAGCAGAAAATGGACGATGAAGCTCAGTTACCAGTGTCTTTAAAGCGGTTTGCTACCAAGAAGAAAACGTCATAA 1614 0.417 MDVTQEDGTVVGVQPPNKQETDNVLEKKYQRGTPLDVSTLGDKKLRGKLAVREKLYGKSVKAATEFEKWLLPLPSKGSFLEPEGVEKTYRIRQESFVNEVDPLSSKNLHDITLPELGPYTLDFTSSGRYMALAGRKGHLGIIDMMQLNLVKEFQVRETVRDVVFLHNELFFAAAQKKYPYIYYRDGTELHCLKEHGSVLRLQFLKNHFLLATINKVGQLHYQDVTTGVMVANFRTSLGRTDVMQVNPFNAVLGLGHSGGTVTMWKPTVSAPLVKMLCHRGPVSALAFDPSGYLMATAGKDKKIKLWDLRKFEVLQSFTGHANTLSFSQKGLLACGNGSFVQVLSNLSGTQNYDRYMTHSMVKGYQIKKVQFRPYEDVLSIGHSMGFSSILIPGSGEPNFDSWVANPFDTPKQRREREVALLLDKLPPETIMLDPRKIGTVQADKRKEKQTKQEREAEKEAAVEAAKTVTLKNKTKGRNKPSKKAKKKQDLVVNAKRPYVEQQLKEEESMSRRKKQKMDDEAQLPVSLKRFATKKKTS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte2g01349 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 275 309 - -
Pte2g01349 537 MobiDBLite consensus disorder prediction 1 20 - -
Pte2g01349 537 SUPERFAMILY WD40 repeat-like 99 383 IPR036322 GO:0005515
Pte2g01349 537 ProSitePatterns Trp-Asp (WD) repeats signature. 294 308 IPR019775 -
Pte2g01349 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 275 316 IPR001680 GO:0005515
Pte2g01349 537 MobiDBLite consensus disorder prediction 438 537 - -
Pte2g01349 537 SMART BING4CT_2 354 434 IPR012952 -
Pte2g01349 537 MobiDBLite consensus disorder prediction 485 523 - -
Pte2g01349 537 Pfam WD domain, G-beta repeat 277 307 IPR001680 GO:0005515
Pte2g01349 537 MobiDBLite consensus disorder prediction 1 23 - -
Pte2g01349 537 FunFam U3 small nucleolar RNA-associated protein 7 107 389 - -
Pte2g01349 537 MobiDBLite consensus disorder prediction 438 464 - -
Pte2g01349 537 Pfam BING4CT (NUC141) domain 355 433 IPR012952 -
Pte2g01349 537 Gene3D - 103 389 IPR015943 GO:0005515
Pte2g01349 537 PANTHER WD-REPEAT PROTEIN BING4 16 531 IPR040315 -
Pte2g01349 537 SMART WD40_4 104 143 IPR001680 GO:0005515
Pte2g01349 537 SMART WD40_4 269 307 IPR001680 GO:0005515
Pte2g01349 537 SMART WD40_4 310 344 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte2g01349 Pte-Chr2 18306506 18314336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte2g01349 103 330 U-box Gene Family AT1G04510 25.620 1.71e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte2g01349 K14768 - qsa:O6P43_008897 771.155